# Ruergeria pomeroyi DSS-3 replete proteome # PI: Mak Saito # Co-PI: Mary Ann Moran # Data Manager: Laura Weber # Version date (v1): 2022-06-14 ========================= protein_id protein_name ncbi_id molecular_weight_kDa DSS3_a1_SC DSS3_b1_SC DSS3_c1_SC ------------------------- 1 chaperonin GroEL [Ruegeria pomeroyi] WP_011046636.1 58 77 78 76 2 outer membrane porin [Ruegeria pomeroyi DSS-3] AAV96656.1 (+1) 36 31 29 29 3 RecName: Full=Elongation factor Tu; Short=EF-Tu Q5LMR5.1 43 62 59 53 4 RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta Q5LMQ5.1 153 105 105 102 5 DNA-directed RNA polymerase; beta' subunit [Ruegeria pomeroyi DSS-3] AAV96732.1 157 110 101 102 6 D-xylose ABC transporter substrate-binding protein [Ruegeria pomeroyi] WP_011046610.1 35 27 23 23 7 glutamate/glutamine/aspartate/asparagine ABC transporter; periplasmic substrate-binding protein [Ruegeria pomeroyi DSS-3] AAV93836.1 40 34 39 38 8 pyruvate carboxylase [Ruegeria pomeroyi DSS-3] AAV94467.1 126 82 77 74 9 RecName: Full=ATP synthase subunit beta; AltName: Full=ATP synthase F1 sector subunit beta; AltName: Full=F-ATPase subunit beta Q5LNP1.1 50 55 56 55 10 molecular chaperone DnaK [Ruegeria pomeroyi] WP_011045815.1 68 59 64 62 11 peptide/opine/nickel uptake family ABC transporter; periplasmic substrate-binding protein [Ruegeria pomeroyi DSS-3] AAV96055.1 (+1) 62 58 59 59 12 RecName: Full=Elongation factor Ts; Short=EF-Ts Q5LRZ5.1 30 33 33 32 13 outer membrane protein; putative [Ruegeria pomeroyi DSS-3] AAV95402.1 18 16 17 13 14 polyribonucleotide nucleotidyltransferase [Ruegeria pomeroyi DSS-3] AAV96616.1 77 60 57 59 15 translation elongation factor G [Ruegeria pomeroyi DSS-3] AAV96724.1 78 67 67 67 16 branched-chain amino acid ABC transporter; periplasmic substrate-binding protein [Ruegeria pomeroyi DSS-3] AAV95215.1 40 39 29 35 17 RecName: Full=Trigger factor; Short=TF; AltName: Full=PPIase Q5LR43.1 49 51 53 51 18 glutamate dehydrogenase [Ruegeria pomeroyi DSS-3] AAV95023.1 53 45 51 47 19 ribosomal protein S1 [Ruegeria pomeroyi DSS-3] AAV94107.1 61 39 41 38 20 carbamoyl-phosphate synthase large subunit [Ruegeria pomeroyi] WP_011046672.1 122 57 61 59 21 NADP-dependent isocitrate dehydrogenase [Ruegeria pomeroyi] WP_011242092.1 79 62 63 61 22 bacterial extracellular solute-binding protein; family 7 [Ruegeria pomeroyi DSS-3] AAV95821.1 38 31 28 28 23 ATP synthase F1; alpha subunit [Ruegeria pomeroyi DSS-3] AAV96399.1 55 39 36 37 24 glutamate synthase; large subunit [Ruegeria pomeroyi DSS-3] AAV96989.1 164 65 58 60 25 acetyl-CoA acetyltransferase [Ruegeria pomeroyi DSS-3] AAV93644.1 41 42 41 39 26 OmpA domain protein [Ruegeria pomeroyi DSS-3] AAV96801.1 22 19 18 19 27 ATP-dependent metalloprotease FtsH [Ruegeria pomeroyi DSS-3] AAV96340.1 (+1) 70 44 45 46 28 RecName: Full=Protein translocase subunit SecA 1 Q5LWK0.1 101 59 58 59 29 RecName: Full=Alanine--tRNA ligase; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS Q5LRU1.1 96 58 50 53 30 aminomethyl-transferring glycine dehydrogenase [Ruegeria pomeroyi] WP_011241843.1 104 55 55 50 31 sigma-54 dependent transcriptional regulator [Ruegeria pomeroyi] WP_011047625.1 49 48 50 49 32 RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha Q5LW32.1 37 33 33 30 33 outer membrane protein; OMP85 family [Ruegeria pomeroyi DSS-3] AAV94955.1 87 45 45 45 34 cell division protein FtsZ [Ruegeria pomeroyi DSS-3] AAV94500.1 57 43 41 43 35 malate dehydrogenase [Ruegeria pomeroyi] WP_011046110.1 34 40 39 40 36 aconitate hydratase 1 [Ruegeria pomeroyi DSS-3] AAV95574.1 97 47 45 47 37 type I glyceraldehyde-3-phosphate dehydrogenase [Ruegeria pomeroyi] WP_011046451.1 36 29 29 29 38 aspartate-semialdehyde dehydrogenase [Ruegeria pomeroyi] WP_011049390.1 37 29 28 29 39 endopeptidase La [Ruegeria pomeroyi] WP_011048315.1 88 49 51 52 40 catalase/peroxidase HPI (plasmid) [Ruegeria pomeroyi DSS-3] AAV97201.1 79 40 44 34 41 hypothetical protein SPO2231 [Ruegeria pomeroyi DSS-3] AAV95497.1 17 14 13 12 42 cysteine synthase A [Ruegeria pomeroyi DSS-3] AAV95512.1 38 30 31 30 43 RecName: Full=50S ribosomal protein L2 Q5LW59.1 31 30 30 26 44 RecName: Full=50S ribosomal protein L7/L12 Q5LMQ4.1 13 10 9 10 45 phenylalanine--tRNA ligase subunit beta [Ruegeria pomeroyi] WP_011049172.1 86 38 41 39 46 pyruvate kinase [Ruegeria pomeroyi] WP_011049280.1 51 37 37 36 47 50S ribosomal protein L9 [Ruegeria pomeroyi] WP_011048001.1 21 18 20 20 48 xanthine dehydrogenase family protein molybdopterin-binding subunit [Ruegeria pomeroyi] WP_011047256.1 84 39 38 39 49 translation initiation factor IF-2 [Ruegeria pomeroyi] WP_011045834.1 90 40 39 35 50 TRAP transporter solute receptor; TAXI family [Ruegeria pomeroyi DSS-3] AAV95453.1 (+1) 35 30 30 32 51 phosphoglycerate dehydrogenase [Ruegeria pomeroyi] WP_011049038.1 56 37 38 39 52 threonyl-tRNA synthetase [Ruegeria pomeroyi DSS-3] AAV94574.1 73 45 40 39 53 ketol-acid reductoisomerase [Ruegeria pomeroyi DSS-3] AAV94654.1 37 27 27 28 54 glucose-6-phosphate 1-dehydrogenase [Ruegeria pomeroyi DSS-3] AAV96269.1 54 36 37 37 55 electron transfer flavoprotein subunit alpha/FixB family protein [Ruegeria pomeroyi] WP_011046469.1 31 20 18 19 56 2-oxoglutarate dehydrogenase E1 component [Ruegeria pomeroyi] WP_011046105.1 110 46 45 40 57 ribosomal protein S10 [Ruegeria pomeroyi DSS-3] AAV97040.1 12 11 11 12 58 type I glutamate--ammonia ligase [Ruegeria pomeroyi] WP_011048012.1 52 35 35 33 59 3-isopropylmalate dehydratase; large subunit [Ruegeria pomeroyi DSS-3] AAV93541.1 50 32 33 31 60 phasin; PhaP [Ruegeria pomeroyi] WP_011047034.1 15 17 19 19 61 ribosomal protein S3 [Ruegeria pomeroyi DSS-3] AAV93804.1 27 28 30 27 62 RecName: Full=Enolase; AltName: Full=2-phospho-D-glycerate hydro-lyase; AltName: Full=2-phosphoglycerate dehydratase Q5LQL4.1 45 30 24 27 63 NADH-quinone oxidoreductase subunit NuoG [Ruegeria pomeroyi] WP_011048473.1 72 34 36 35 64 methionine adenosyltransferase [Ruegeria pomeroyi] WP_011241796.1 42 30 27 29 65 3-deoxy-7-phosphoheptulonate synthase class II [Ruegeria pomeroyi] WP_044028232.1 50 31 29 29 66 polyamine ABC transporter periplasmic binding protein [Ruegeria pomeroyi DSS-3] AAV96699.1 38 29 26 27 67 sulfite reductase; putative [Ruegeria pomeroyi DSS-3] AAV95879.1 61 37 38 34 68 RecName: Full=Aspartate--tRNA(Asp/Asn) ligase; AltName: Full=Aspartyl-tRNA synthetase; Short=AspRS; AltName: Full=Non-discriminating aspartyl-tRNA synthetase; Short=ND-AspRS Q5LUX6.1 66 36 36 32 69 transketolase [Ruegeria pomeroyi] WP_011047598.1 72 34 34 37 70 RecName: Full=Xylose isomerase Q5LV46.1 49 31 31 27 71 adenosylhomocysteinase [Ruegeria pomeroyi DSS-3] AAV97075.1 50 28 28 26 72 DNA polymerase III subunit beta [Ruegeria pomeroyi] WP_011045921.1 40 28 32 30 73 formate dehydrogenase; alpha subunit; putative [Ruegeria pomeroyi DSS-3] AAV95075.1 106 43 40 36 74 aromatic amino acid aminotransferase [Ruegeria pomeroyi DSS-3] AAV96941.1 43 31 29 33 75 RecName: Full=Bifunctional purine biosynthesis protein PurH; Includes: RecName: Full=Phosphoribosylaminoimidazolecarboxamide formyltransferase; AltName: Full=AICAR transformylase; Includes: RecName: Full=IMP cyclohydrolase; AltName: Full=ATIC; AltName: Full=IMP synthase; AltName: Full=Inosinicase Q5LN38.1 56 39 36 33 76 type I DNA topoisomerase [Ruegeria pomeroyi] WP_011048772.1 98 31 38 41 77 sulfate adenylyltransferase [Ruegeria pomeroyi DSS-3] AAV94205.1 64 38 40 38 78 O-acetylhomoserine aminocarboxypropyltransferase [Ruegeria pomeroyi DSS-3] AAV94718.1 46 28 31 28 79 ribonuclease; Rne/Rng family [Ruegeria pomeroyi DSS-3] AAV95172.1 108 31 34 36 80 ABC transporter substrate-binding protein [Ruegeria pomeroyi] WP_044028622.1 57 24 21 26 81 cytosol aminopeptidase [Ruegeria pomeroyi DSS-3] AAV95707.1 52 30 30 26 82 30S ribosomal protein S4 [Ruegeria pomeroyi] WP_011048871.1 24 27 25 24 83 ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV93764.2 61 26 28 29 84 formate--tetrahydrofolate ligase [Ruegeria pomeroyi DSS-3] AAV96338.1 60 29 33 33 85 toxic anion resistance protein [Ruegeria pomeroyi] WP_011048682.1 43 29 33 32 86 ribosomal protein L1 [Ruegeria pomeroyi DSS-3] AAV96738.1 24 21 22 21 87 prolyl-tRNA synthetase [Ruegeria pomeroyi DSS-3] AAV94421.1 53 30 36 28 88 pyruvate dehydrogenase complex; E1 component; beta subunit [Ruegeria pomeroyi DSS-3] AAV95507.1 49 29 28 27 89 TolC family outer membrane protein [Ruegeria pomeroyi] WP_011046982.1 51 28 32 31 90 oligopeptide ABC transporter; periplasmic oligopeptide-binding protein [Ruegeria pomeroyi DSS-3] AAV94012.1 75 31 32 28 91 NADH-quinone oxidoreductase subunit E [Ruegeria pomeroyi] WP_011048479.1 45 29 29 26 92 citrate synthase I [Ruegeria pomeroyi DSS-3] AAV95425.1 48 28 23 24 93 RecName: Full=30S ribosomal protein S2 Q5LRZ4.1 28 26 28 26 94 isoleucine--tRNA ligase [Ruegeria pomeroyi] WP_011048826.1 110 36 36 32 95 xanthine dehydrogenase family protein; large subunit (plasmid) [Ruegeria pomeroyi DSS-3] AAV97545.1 79 34 34 31 96 ADP-forming succinate--CoA ligase subunit beta [Ruegeria pomeroyi] WP_011046108.1 42 30 31 30 97 CoA-acylating methylmalonate-semialdehyde dehydrogenase [Ruegeria pomeroyi] WP_011047925.1 54 29 32 28 98 peptidoglycan DD-metalloendopeptidase family protein [Ruegeria pomeroyi] WP_011048388.1 41 30 29 29 99 electron transfer flavoprotein; beta subunit [Ruegeria pomeroyi DSS-3] AAV94026.1 27 20 19 20 100 succinate dehydrogenase; flavoprotein subunit [Ruegeria pomeroyi DSS-3] AAV93678.1 65 34 33 32 101 ribonucleoside-diphosphate reductase; putative [Ruegeria pomeroyi DSS-3] AAV96429.1 84 29 31 28 102 unnamed protein product [Ruegeria pomeroyi DSS-3] CAW44382.1 39 28 23 25 103 D-alanyl-D-alanine carboxypeptidase [Ruegeria pomeroyi DSS-3] AAV95980.1 (+1) 42 22 21 23 104 transcription termination factor NusA [Ruegeria pomeroyi] WP_011045836.1 60 35 37 36 105 RecName: Full=Valine--tRNA ligase; AltName: Full=Valyl-tRNA synthetase; Short=ValRS Q5LP30.1 114 42 36 38 106 sugar ABC transporter; periplasmic sugar-binding protein [Ruegeria pomeroyi DSS-3] AAV93923.1 (+1) 66 26 26 23 107 NADH-quinone oxidoreductase; F subunit [Ruegeria pomeroyi DSS-3] AAV96018.1 47 30 29 28 108 cobalt chelatase; CobS subunit [Ruegeria pomeroyi DSS-3] AAV96094.2 37 29 28 30 109 thiol-specific antioxidant protein [Ruegeria pomeroyi DSS-3] AAV96610.1 24 22 23 22 110 phosphoenolpyruvate carboxykinase [Ruegeria pomeroyi] WP_011046459.1 58 38 31 35 111 RecName: Full=Glucose-6-phosphate isomerase; Short=GPI; AltName: Full=Phosphoglucose isomerase; Short=PGI; AltName: Full=Phosphohexose isomerase; Short=PHI Q5LRS9.1 58 30 27 28 112 M3 family oligoendopeptidase [Ruegeria pomeroyi] WP_011047150.1 68 26 25 25 113 ATP-dependent Clp protease ATP-binding subunit ClpA [Ruegeria pomeroyi] WP_011048859.1 85 34 35 34 114 arginyl-tRNA synthetase [Ruegeria pomeroyi DSS-3] AAV95754.1 64 36 38 37 115 MULTISPECIES: 50S ribosomal protein L3 [Ruegeria] WP_011049497.1 25 18 15 18 116 3-oxoacyl-(acyl carrier protein) synthase II [Ruegeria pomeroyi DSS-3] AAV95535.1 44 25 25 23 117 acetyl-coenzyme A synthetase [Ruegeria pomeroyi DSS-3] AAV95092.1 72 32 32 30 118 phosphogluconate dehydratase [Ruegeria pomeroyi] WP_044028638.1 62 24 22 22 119 peptidyl-prolyl cis-trans isomerase; cyclophilin-type [Ruegeria pomeroyi DSS-3] AAV95500.1 18 20 20 18 120 hypothetical protein SPO3566 [Ruegeria pomeroyi DSS-3] AAV96791.1 28 26 27 27 121 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha [Ruegeria pomeroyi] WP_011048520.1 56 29 29 28 122 RNA polymerase sigma factor RpoD [Ruegeria pomeroyi] WP_011047484.1 75 29 32 31 123 RecName: Full=Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Short=Asp/Glu-ADT subunit B Q5LPK1.1 56 27 31 25 124 vitamin B12-dependent ribonucleotide reductase [Ruegeria pomeroyi] WP_011047860.1 132 34 29 29 125 argininosuccinate synthase [Ruegeria pomeroyi DSS-3] AAV93349.1 45 30 29 25 126 seryl-tRNA synthetase [Ruegeria pomeroyi DSS-3] AAV95587.1 47 31 31 29 127 DNA topoisomerase (ATP-hydrolyzing) subunit B [Ruegeria pomeroyi] WP_011045926.1 90 31 31 28 128 Tol-Pal system beta propeller repeat protein TolB [Ruegeria pomeroyi] WP_011048799.1 47 28 29 25 129 inosine-5'-monophosphate dehydrogenase [Ruegeria pomeroyi DSS-3] AAV95311.1 51 24 28 24 130 sugar ABC transporter; periplasmic sugar-binding protein [Ruegeria pomeroyi DSS-3] AAV93697.1 35 31 23 27 131 transcription termination factor Rho [Ruegeria pomeroyi DSS-3] AAV97108.1 47 25 28 30 132 cysteine synthase A [Ruegeria pomeroyi] WP_011047652.1 37 21 22 23 133 aldehyde dehydrogenase family protein [Ruegeria pomeroyi] WP_011049065.1 51 24 25 27 134 glycoside hydrolase [Ruegeria pomeroyi] WP_011047932.1 79 26 29 24 135 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [Ruegeria pomeroyi] WP_011049521.1 (+1) 39 26 24 23 136 carboxyl-terminal protease family protein [Ruegeria pomeroyi DSS-3] AAV97026.1 47 27 30 27 137 dihydrolipoyl dehydrogenase [Ruegeria pomeroyi] WP_011046101.1 49 22 23 18 138 acetolactate synthase; large subunit; biosynthetic type [Ruegeria pomeroyi DSS-3] AAV95826.1 64 27 27 28 139 peptidase; M20/M25/M40 family [Ruegeria pomeroyi DSS-3] AAV95845.1 51 32 27 26 140 3-methylmercaptopropionyl-CoA ligase [Ruegeria pomeroyi] WP_011047771.1 59 25 28 23 141 hypothetical protein SPOA0039 (plasmid) [Ruegeria pomeroyi DSS-3] AAV97179.1 71 26 28 26 142 ATP-dependent Clp protease; ATP-binding subunit ClpX [Ruegeria pomeroyi DSS-3] AAV94308.2 46 24 24 23 143 oxidoreductase; FAD-binding protein (plasmid) [Ruegeria pomeroyi DSS-3] AAV97342.1 59 26 26 24 144 RecName: Full=50S ribosomal protein L20 Q5LMG5.1 13 13 13 13 145 RecName: Full=Leucine--tRNA ligase; AltName: Full=Leucyl-tRNA synthetase; Short=LeuRS Q5LMY0.1 95 31 33 31 146 indolepyruvate ferredoxin oxidoreductase family protein [Ruegeria pomeroyi] WP_011047606.1 124 29 38 34 147 methionine--tRNA ligase [Ruegeria pomeroyi] WP_011047140.1 64 25 26 27 148 ribosomal protein S5 [Ruegeria pomeroyi DSS-3] AAV93819.1 21 16 17 16 149 DNA-binding protein HU [Ruegeria pomeroyi DSS-3] AAV96965.1 (+1) 9 11 11 11 150 protease modulator HflC [Ruegeria pomeroyi] WP_011047069.1 33 21 20 17 151 peptidylprolyl isomerase [Ruegeria pomeroyi] WP_011047868.1 66 28 27 28 152 acetyl-CoA carboxylase; biotin carboxylase [Ruegeria pomeroyi DSS-3] AAV94314.1 49 21 22 22 153 pyruvate dehydrogenase complex; E2 component; dihydrolipoamide acetyltransferase [Ruegeria pomeroyi DSS-3] AAV95508.1 45 20 19 21 154 helicase; putative [Ruegeria pomeroyi DSS-3] AAV94704.1 105 19 19 20 155 NAD-dependent succinate-semialdehyde dehydrogenase [Ruegeria pomeroyi] WP_044028714.1 52 29 27 25 156 taurine--pyruvate aminotransferase [Ruegeria pomeroyi DSS-3] AAV93981.1 51 26 25 25 157 hypothetical protein SPO2290 [Ruegeria pomeroyi DSS-3] AAV95554.2 39 23 22 18 158 Tim44/TimA family putative adaptor protein [Ruegeria pomeroyi] WP_011049557.1 24 20 22 23 159 branched-chain amino acid ABC transporter; periplasmic branched-chain amino acid binding protein; putative [Ruegeria pomeroyi DSS-3] AAV96518.1 46 24 23 22 160 RecName: Full=30S ribosomal protein S7 Q5LMR3.1 18 17 19 17 161 fatty oxidation complex; alpha subunit [Ruegeria pomeroyi DSS-3] AAV96161.1 79 28 34 32 162 unnamed protein product [Ruegeria pomeroyi DSS-3] CBF76760.1 21 14 13 13 163 peptidoglycan-binding protein; putative [Ruegeria pomeroyi DSS-3] AAV96841.1 41 20 20 21 164 type I secretion system permease/ATPase [Ruegeria pomeroyi] WP_011049406.1 63 24 23 23 165 mechanosensitive ion channel family protein [Ruegeria pomeroyi DSS-3] AAV95150.1 (+1) 82 20 23 21 166 phosphoenolpyruvate-protein phosphotransferase [Ruegeria pomeroyi DSS-3] AAV96270.1 82 28 28 27 167 serine protease; subtilase family (plasmid) [Ruegeria pomeroyi DSS-3] AAV97339.1 98 29 28 33 168 unnamed protein product [Ruegeria pomeroyi DSS-3] CBG18593.1 59 23 24 19 169 xylose ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV94168.1 (+1) 28 22 22 24 170 3-isopropylmalate dehydrogenase [Ruegeria pomeroyi DSS-3] AAV93535.1 39 23 21 22 171 unnamed protein product [Ruegeria pomeroyi DSS-3] CBC30346.1 65 28 28 25 172 RecName: Full=30S ribosomal protein S13 Q5LW34.1 14 14 14 14 173 quinone oxidoreductase [Ruegeria pomeroyi] WP_011045999.1 35 19 17 14 174 fructose bisphosphate aldolase [Ruegeria pomeroyi] WP_011047631.1 31 23 24 24 175 PAN domain protein [Ruegeria pomeroyi DSS-3] AAV93461.1 193 35 30 29 176 enoyl-CoA hydratase [Ruegeria pomeroyi] WP_011045918.1 28 22 20 21 177 DNA gyrase subunit A [Ruegeria pomeroyi] WP_030003216.1 101 28 26 26 178 lysyl-tRNA synthetase [Ruegeria pomeroyi DSS-3] AAV93773.1 (+1) 62 27 23 21 179 oxidoreductase; Gfo/Idh/MocA family [Ruegeria pomeroyi DSS-3] AAV94170.1 36 20 20 20 180 50S ribosomal protein L5 [Ruegeria pomeroyi] WP_011046256.1 21 17 15 16 181 DegQ family serine endoprotease [Ruegeria pomeroyi] WP_011047072.1 51 21 19 18 182 RecName: Full=Phenylalanine--tRNA ligase alpha subunit; AltName: Full=Phenylalanyl-tRNA synthetase alpha subunit; Short=PheRS Q5LMG9.1 40 22 23 20 183 phosphoribosylformylglycinamidine synthase subunit PurL [Ruegeria pomeroyi] WP_011047603.1 76 26 27 25 184 50S ribosomal protein L21 [Ruegeria pomeroyi] WP_011047721.1 20 16 15 15 185 hypothetical protein [Ruegeria pomeroyi] WP_011049008.1 40 21 20 23 186 ribosomal protein L15 [Ruegeria pomeroyi DSS-3] AAV93822.2 16 15 15 16 187 glutamate/glutamine/aspartate/asparagine ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV93839.1 (+1) 30 19 24 23 188 phosphoglycerate kinase [Ruegeria pomeroyi DSS-3] AAV95501.1 42 20 24 23 189 PQQ enzyme repeat family protein [Ruegeria pomeroyi DSS-3] AAV95591.1 (+1) 44 19 20 20 190 PaxA; putative [Ruegeria pomeroyi DSS-3] AAV93552.1 49 24 28 22 191 universal stress protein family protein [Ruegeria pomeroyi DSS-3] AAV96752.2 30 24 23 23 192 ribosomal protein L13 [Ruegeria pomeroyi DSS-3] AAV94976.1 17 21 21 18 193 TRAP dicarboxylate transporter DctP subunit [Ruegeria pomeroyi DSS-3] AAV96914.1 (+1) 40 23 19 22 194 chaperonin; 10 kDa [Ruegeria pomeroyi DSS-3] AAV94191.1 10 13 12 12 195 UvrABC system protein A [Ruegeria pomeroyi DSS-3] AAV95484.1 107 30 29 31 196 putrescine ABC transporter; periplasmic putrescine-binding protein [Ruegeria pomeroyi DSS-3] AAV96695.1 40 22 21 20 197 Fe-S cluster assembly ATPase SufC [Ruegeria pomeroyi] WP_011047746.1 27 19 18 18 198 MULTISPECIES: peptidylprolyl isomerase [Ruegeria] WP_011047955.1 19 16 14 18 199 beta-ketoacyl-ACP synthase I [Ruegeria pomeroyi] WP_011242217.1 43 16 18 18 200 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [Ruegeria pomeroyi] WP_030003161.1 52 20 22 20 201 adenylosuccinate lyase [Ruegeria pomeroyi DSS-3] AAV95567.1 48 26 27 22 202 unnamed protein product [Ruegeria pomeroyi DSS-3] CBV01758.1 52 22 24 23 203 ABC transporter substrate-binding protein [Ruegeria pomeroyi] WP_011045874.1 53 23 21 18 204 adenylosuccinate synthetase [Ruegeria pomeroyi DSS-3] AAV94607.1 46 21 22 24 205 Na(+)-translocating NADH-quinone reductase subunit F (plasmid) [Ruegeria pomeroyi DSS-3] AAV97173.1 45 17 18 19 206 unnamed protein product [Ruegeria pomeroyi DSS-3] CAY08572.1 75 25 29 24 207 PBP1A family penicillin-binding protein [Ruegeria pomeroyi] WP_011048292.1 92 23 26 26 208 NAD(P)-dependent oxidoreductase [Ruegeria pomeroyi] WP_011049449.1 52 24 26 21 209 FAD-dependent thymidylate synthase [Ruegeria pomeroyi] WP_030003195.1 35 21 21 22 210 ubiquinol-cytochrome c reductase iron-sulfur subunit [Ruegeria pomeroyi] WP_011046033.1 20 13 13 12 211 penicillin-binding protein activator [Ruegeria pomeroyi] WP_011046159.1 39 20 20 20 212 glycine--tRNA ligase subunit beta [Ruegeria pomeroyi] WP_011047096.1 80 22 22 24 213 phosphomannomutase/phosphoglucomutase [Ruegeria pomeroyi DSS-3] AAV94251.2 54 20 20 21 214 D-amino acid aminotransferase; putative [Ruegeria pomeroyi DSS-3] AAV96828.1 32 16 18 17 215 acetyl-CoA carboxylase; carboxyl transferase; beta subunit [Ruegeria pomeroyi DSS-3] AAV97031.1 35 20 16 17 216 DNA polymerase I [Ruegeria pomeroyi] WP_011049515.1 103 29 26 24 217 xanthine dehydrogenase family protein subunit M [Ruegeria pomeroyi] WP_011242189.1 30 21 22 22 218 TPR domain protein [Ruegeria pomeroyi DSS-3] AAV93635.1 (+1) 66 21 22 22 219 2-isopropylmalate synthase [Ruegeria pomeroyi DSS-3] AAV93740.1 57 27 24 22 220 HflK protein [Ruegeria pomeroyi DSS-3] AAV94618.1 41 17 19 19 221 acetyl-CoA C-acetyltransferase [Ruegeria pomeroyi DSS-3] AAV96635.1 40 26 24 24 222 ribosomal protein L11 [Ruegeria pomeroyi DSS-3] AAV96739.1 15 9 9 11 223 RecName: Full=50S ribosomal protein L4 Q5LLU7.1 22 13 14 14 224 succinate--CoA ligase subunit alpha [Ruegeria pomeroyi] WP_011046107.1 30 16 17 17 225 3-oxoadipate enol-lactonase [Ruegeria pomeroyi] WP_011242211.1 28 18 20 18 226 hypothetical protein SPO1272 [Ruegeria pomeroyi DSS-3] AAV94564.1 (+1) 40 14 15 15 227 thiol:disulfide interchange protein; DsbA family [Ruegeria pomeroyi DSS-3] AAV96672.1 24 14 15 15 228 acetoacetyl-CoA reductase [Ruegeria pomeroyi DSS-3] AAV93643.1 25 14 14 14 229 LysM domain protein [Ruegeria pomeroyi DSS-3] AAV94362.1 (+1) 40 19 19 18 230 50S ribosomal protein L6 [Ruegeria pomeroyi] WP_011046259.1 19 18 16 15 231 glutamate-5-semialdehyde dehydrogenase [Ruegeria pomeroyi] WP_011047715.1 44 18 22 23 232 tyrosine--tRNA ligase [Ruegeria pomeroyi] WP_011048192.1 46 21 21 22 233 class II fructose-bisphosphatase [Ruegeria pomeroyi] WP_044028162.1 34 21 20 17 234 RecName: Full=Dihydroxy-acid dehydratase; Short=DAD Q5LN98.1 65 23 25 25 235 gamma-glutamyltransferase [Ruegeria pomeroyi] WP_011046384.1 63 21 23 21 236 FAD binding domain-containing protein [Ruegeria pomeroyi] WP_011047257.1 27 16 20 19 237 endoribonuclease L-PSP family protein [Ruegeria pomeroyi DSS-3] AAV96951.1 16 11 13 11 238 M20 family metallopeptidase [Ruegeria pomeroyi] WP_011048508.1 42 18 17 17 239 cobaltochelatase subunit CobT [Ruegeria pomeroyi] WP_011048555.1 70 18 18 20 240 aldo/keto reductase [Ruegeria pomeroyi] WP_011242122.1 36 21 20 15 241 peptidoglycan binding domain protein [Ruegeria pomeroyi DSS-3] AAV94642.1 (+1) 68 24 28 25 242 MULTISPECIES: 30S ribosomal protein S11 [Ruegeria] WP_011046269.1 14 15 12 14 243 saccharopine dehydrogenase NADP-binding domain-containing protein [Ruegeria pomeroyi] WP_011048992.1 42 22 22 20 244 peptide/opine/nickel uptake family ABC transporter; periplasmic substrate-binding protein [Ruegeria pomeroyi DSS-3] AAV94830.1 59 23 21 19 245 sarcosine oxidase; alpha subunit family [Ruegeria pomeroyi DSS-3] AAV95607.1 110 28 24 22 246 HemY domain protein [Ruegeria pomeroyi DSS-3] AAV97065.1 (+1) 53 19 18 19 247 complex I NDUFA9 subunit family protein [Ruegeria pomeroyi] WP_011049451.1 36 20 19 19 248 AsmA family protein [Ruegeria pomeroyi DSS-3] AAV94250.1 66 25 25 22 249 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA [Ruegeria pomeroyi] WP_011048666.1 53 22 24 25 250 exodeoxyribonuclease III [Ruegeria pomeroyi] WP_011049108.1 30 22 22 20 251 NADP-dependent malic enzyme [Ruegeria pomeroyi DSS-3] AAV93343.1 81 26 23 25 252 pyruvate; phosphate dikinase [Ruegeria pomeroyi DSS-3] AAV94647.2 92 21 24 25 253 signal recognition particle protein [Ruegeria pomeroyi DSS-3] AAV96481.1 54 21 20 22 254 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [Ruegeria pomeroyi] WP_011047962.1 36 18 19 15 255 NADH-quinone oxidoreductase subunit D [Ruegeria pomeroyi] WP_144084070.1 46 18 17 16 256 polysaccharide biosynthesis/export protein [Ruegeria pomeroyi DSS-3] AAV95036.1 40 16 16 15 257 glucose-6-phosphate dehydrogenase [Ruegeria pomeroyi] WP_011047774.1 54 19 20 21 258 beta-ketothiolase [Ruegeria pomeroyi DSS-3] AAV93470.1 40 21 21 19 259 fumarate hydratase; class I; putative [Ruegeria pomeroyi DSS-3] AAV94785.1 53 21 21 18 260 FtsK/SpoIIIE family protein [Ruegeria pomeroyi DSS-3] AAV96642.1 108 19 19 24 261 RecName: Full=Chaperone protein DnaJ Q5LWJ5.1 41 18 18 17 262 NAD-dependent DNA ligase LigA [Ruegeria pomeroyi] WP_011047415.1 80 23 23 24 263 DUF2125 domain-containing protein [Ruegeria pomeroyi] WP_011049124.1 54 13 14 16 264 3-phosphoshikimate 1-carboxyvinyltransferase [Ruegeria pomeroyi] WP_011241800.1 46 21 22 23 265 thiosulfate sulfurtransferase; putative [Ruegeria pomeroyi DSS-3] AAV96940.1 31 19 18 15 266 argininosuccinate lyase [Ruegeria pomeroyi] WP_011046093.1 50 22 21 24 267 RecName: Full=Glutamate--tRNA ligase 1; AltName: Full=Glutamyl-tRNA synthetase 1; Short=GluRS 1 Q5LWB2.1 (+1) 49 22 28 27 268 aminopeptidase N [Ruegeria pomeroyi DSS-3] AAV96082.1 94 20 22 23 269 glutathione-disulfide reductase [Ruegeria pomeroyi DSS-3] AAV94617.1 49 21 23 19 270 RecName: Full=ATP synthase gamma chain; AltName: Full=ATP synthase F1 sector gamma subunit; AltName: Full=F-ATPase gamma subunit Q5LNP0.1 31 19 20 17 271 homoserine dehydrogenase [Ruegeria pomeroyi] WP_011047468.1 45 18 16 21 272 glutamate N-acetyltransferase/amino-acid acetyltransferase [Ruegeria pomeroyi DSS-3] AAV93390.1 42 21 20 20 273 propionyl-CoA carboxylase; alpha subunit [Ruegeria pomeroyi DSS-3] AAV94401.1 74 21 24 23 274 MULTISPECIES: 50S ribosomal protein L17 [Ruegeria] WP_011046271.1 16 11 9 8 275 threonine synthase [Ruegeria pomeroyi] WP_011048764.1 50 21 20 17 276 glutathione synthetase [Ruegeria pomeroyi DSS-3] AAV93719.1 35 19 20 19 277 UDP-N-acetylglucosamine pyrophosphorylase [Ruegeria pomeroyi DSS-3] AAV96038.1 47 22 20 19 278 RecName: Full=Protein-export protein SecB Q5LLN4.1 19 10 12 10 279 serine hydroxymethyltransferase [Ruegeria pomeroyi] WP_011047309.1 46 19 17 18 280 ACP S-malonyltransferase [Ruegeria pomeroyi] WP_011047995.1 32 17 14 16 281 unnamed protein product [Ruegeria pomeroyi DSS-3] CBF99571.1 25 17 19 16 282 ABC transporter substrate-binding protein [Ruegeria pomeroyi] WP_011046953.1 58 19 17 18 283 acyl-CoA dehydrogenase C-terminal domain-containing protein [Ruegeria pomeroyi] WP_011048615.1 64 21 21 26 284 GTP-binding protein TypA [Ruegeria pomeroyi DSS-3] AAV95303.1 66 20 17 19 285 Na(+)-translocating NADH-quinone reductase subunit A [Ruegeria pomeroyi] WP_011241812.1 47 19 18 23 286 6-phosphogluconate dehydrogenase domain protein [Ruegeria pomeroyi DSS-3] AAV94097.1 30 17 17 16 287 putative microcin C transport system substrate-binding protein [Ruegeria pomeroyi DSS-3] AAV96762.1 73 23 21 20 288 DNA polymerase III; gamma and tau subunits [Ruegeria pomeroyi DSS-3] AAV96775.1 63 21 21 22 289 hypothetical protein SPO1352a [Ruegeria pomeroyi DSS-3] AHB86019.1 18 11 11 14 290 RecName: Full=ATP synthase subunit b; AltName: Full=ATP synthase F(0) sector subunit b; AltName: Full=ATPase subunit I; AltName: Full=F-type ATPase subunit b; Short=F-ATPase subunit b Q5LNH2.1 20 12 15 16 291 pterin binding MetH protein [Ruegeria pomeroyi DSS-3] AAV95142.1 37 15 16 16 292 ribose-phosphate pyrophosphokinase [Ruegeria pomeroyi DSS-3] AAV96394.1 37 18 17 18 293 saccharopine dehydrogenase family protein [Ruegeria pomeroyi] WP_011046357.1 44 18 16 19 294 DNA topoisomerase IV subunit A [Ruegeria pomeroyi] WP_011046476.1 87 21 24 22 295 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [Ruegeria pomeroyi] WP_011046938.1 38 17 18 17 296 TRAP transporter solute receptor; DctP family [Ruegeria pomeroyi DSS-3] AAV95873.1 36 18 17 18 297 amidophosphoribosyltransferase [Ruegeria pomeroyi DSS-3] AAV95922.1 54 15 18 23 298 RecName: Full=50S ribosomal protein L19 Q5LNE8.1 14 11 12 10 299 RecName: Full=50S ribosomal protein L14 Q5LW48.1 13 9 9 9 300 AAA family ATPase [Ruegeria pomeroyi] WP_011048918.1 126 20 20 21 301 S-methyltransferase MetH protein [Ruegeria pomeroyi DSS-3] AAV95163.1 36 16 17 15 302 enoyl-(acyl-carrier-protein) reductase [Ruegeria pomeroyi DSS-3] AAV95410.1 29 17 19 15 303 Fe-S cluster assembly protein SufB [Ruegeria pomeroyi] WP_011047751.1 56 20 21 20 304 His/Glu/Gln/Arg/opine family ABC transporter; periplasmic His/Glu/Gln/Arg/opine family-binding protein [Ruegeria pomeroyi DSS-3] AAV94595.1 (+1) 29 10 10 10 305 unnamed protein product [Ruegeria pomeroyi DSS-3] CBV35103.1 31 17 14 13 306 RecName: Full=Glutamate--tRNA ligase 2; AltName: Full=Glutamyl-tRNA synthetase 2; Short=GluRS 2 Q5LRH2.1 51 22 16 23 307 polyhydroxyalkanoate depolymerase [Ruegeria pomeroyi] WP_011047032.1 48 19 18 17 308 malate synthase G [Ruegeria pomeroyi] WP_011048539.1 77 24 23 20 309 glucan biosynthesis protein G [Ruegeria pomeroyi] WP_011048589.1 56 19 18 17 310 phosphoserine transaminase [Ruegeria pomeroyi] WP_011049037.1 42 17 18 18 311 recombinase RecA [Ruegeria pomeroyi] WP_044028263.1 38 17 15 17 312 co-chaperone GrpE [Ruegeria pomeroyi DSS-3] AAV93341.1 21 14 13 13 313 D-isomer specific 2-hydroxyacid dehydrogenase family protein [Ruegeria pomeroyi DSS-3] AAV93940.1 36 22 21 20 314 invasion associated family protein [Ruegeria pomeroyi DSS-3] AAV95209.1 (+1) 24 15 14 15 315 hypothetical protein SPO2459 [Ruegeria pomeroyi DSS-3] AAV95713.1 (+1) 26 10 11 10 316 L-asparaginase; thermolabile family [Ruegeria pomeroyi DSS-3] AAV96576.1 36 18 13 15 317 thioredoxin [Ruegeria pomeroyi DSS-3] AAV96649.1 32 15 15 16 318 OmpA domain protein [Ruegeria pomeroyi DSS-3] AAV96854.1 67 19 20 24 319 Mrp/NBP35 family ATP-binding protein [Ruegeria pomeroyi] WP_011047536.1 37 15 19 15 320 uracil phosphoribosyltransferase [Ruegeria pomeroyi] WP_011048626.1 23 21 20 17 321 signal peptidase I [Ruegeria pomeroyi] WP_011048889.1 31 16 17 17 322 aminotransferase; class IV [Ruegeria pomeroyi DSS-3] AAV93706.1 31 18 18 18 323 transcriptional regulator; LacI family [Ruegeria pomeroyi DSS-3] AAV96905.1 37 16 17 15 324 glucokinase [Ruegeria pomeroyi] WP_011046613.1 32 20 22 21 325 cytochrome c oxidase subunit II [Ruegeria pomeroyi] WP_011048769.1 31 13 11 11 326 tol-pal system protein YbgF [Ruegeria pomeroyi] WP_011048797.1 28 17 17 15 327 bmp family protein [Ruegeria pomeroyi DSS-3] AAV93956.1 38 17 13 18 328 27 kDa outer membrane protein; putative [Ruegeria pomeroyi DSS-3] AAV95839.1 28 14 17 16 329 sulfonate ABC transporter; periplasmic sulfonate-binding protein [Ruegeria pomeroyi DSS-3] AAV96844.1 (+1) 35 19 15 16 330 MULTISPECIES: cold-shock protein [Ruegeria] WP_011047016.1 7 11 10 8 331 ATP-dependent Clp protease; proteolytic subunit ClpP [Ruegeria pomeroyi DSS-3] AAV94307.2 22 13 15 13 332 RecName: Full=Probable transaldolase Q5LNS5.1 23 16 14 14 333 3;4-dihydroxy-2-butanone-4-phosphate synthase [Ruegeria pomeroyi] WP_011047495.1 40 17 17 17 334 enoyl-ACP reductase [Ruegeria pomeroyi] WP_011242216.1 28 12 11 13 335 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase Q5LU62.1 50 15 15 14 336 3-isopropylmalate dehydratase small subunit [Ruegeria pomeroyi] WP_011045983.1 22 16 18 15 337 propionate-CoA ligase PrpE [Ruegeria pomeroyi] WP_011048634.1 69 20 18 20 338 aspartate aminotransferase [Ruegeria pomeroyi DSS-3] AAV94556.1 43 12 13 15 339 twin-arginine translocation pathway signal sequence domain protein [Ruegeria pomeroyi DSS-3] AAV95139.1 68 18 19 18 340 hypothetical protein SPO2499 [Ruegeria pomeroyi DSS-3] AAV95749.2 8 7 6 7 341 efflux transporter; RND family; MFP subunit [Ruegeria pomeroyi DSS-3] AAV95593.1 (+1) 46 14 15 17 342 RecName: Full=Tryptophan synthase beta chain Q5LV94.1 46 17 18 16 343 SIMPL domain-containing protein [Ruegeria pomeroyi] WP_011047166.1 25 18 17 14 344 branched-chain amino acid ABC transporter; periplasmic substrate-binding protein [Ruegeria pomeroyi DSS-3] AAV95125.1 41 15 18 17 345 twin-arginine translocation pathway signal sequence domain protein; putative [Ruegeria pomeroyi DSS-3] AAV95348.1 20 13 10 11 346 aminotransferase; classes I and II [Ruegeria pomeroyi DSS-3] AAV96455.2 44 18 19 17 347 ATP-dependent Clp protease; ATP-binding subunit ClpB [Ruegeria pomeroyi DSS-3] AAV96505.1 96 17 25 27 348 outer membrane lipoprotein carrier protein LolA; putative [Ruegeria pomeroyi DSS-3] AAV96641.1 22 12 12 12 349 hypothetical protein SPOA0123 (plasmid) [Ruegeria pomeroyi DSS-3] AAV97260.1 109 21 19 21 350 NAD(P)H-quinone oxidoreductase [Ruegeria pomeroyi] WP_011045998.1 34 16 14 15 351 acyl-CoA dehydrogenase family protein [Ruegeria pomeroyi] WP_011046628.1 46 20 17 17 352 methylmalonyl-CoA mutase [Ruegeria pomeroyi] WP_011046852.1 77 20 20 20 353 peptide chain release factor 2 [Ruegeria pomeroyi] WP_011048290.1 42 15 14 12 354 ABC transporter ATP-binding protein [Ruegeria pomeroyi] WP_011048513.1 69 18 16 15 355 DUF2853 family protein [Ruegeria pomeroyi] WP_011049530.1 12 11 13 13 356 poly(3-hydroxyalkanoate) polymerase [Ruegeria pomeroyi DSS-3] AAV94584.1 67 18 16 19 357 phosphoglucosamine mutase [Ruegeria pomeroyi DSS-3] AAV94652.1 47 17 17 19 358 fumarylacetoacetate hydrolase family protein [Ruegeria pomeroyi DSS-3] AAV95689.1 30 15 15 15 359 malyl-CoA lyase [Ruegeria pomeroyi DSS-3] AAV96832.1 34 14 14 15 360 thioredoxin-disulfide reductase [Ruegeria pomeroyi] WP_011046652.1 34 15 17 16 361 sigma-54 dependent transcriptional regulator [Ruegeria pomeroyi] WP_011047811.1 52 16 17 16 362 esterase (plasmid) [Ruegeria pomeroyi DSS-3] AAV97564.1 26 15 15 13 363 RecName: Full=Phosphoribosylaminoimidazole-succinocarboxamide synthase; AltName: Full=SAICAR synthetase Q5LS81.1 28 15 13 16 364 translation elongation factor 4 [Ruegeria pomeroyi] WP_011046731.1 67 17 19 14 365 F0F1 ATP synthase subunit B' [Ruegeria pomeroyi] WP_011048924.1 19 11 12 10 366 HlyD family type I secretion periplasmic adaptor subunit [Ruegeria pomeroyi] WP_011049407.1 48 18 19 17 367 glycine cleavage system aminomethyltransferase GcvT [Ruegeria pomeroyi] WP_011241841.1 39 17 16 17 368 oligopeptide ABC transporter; periplasmic oligopeptide-binding protein [Ruegeria pomeroyi DSS-3] AAV93876.1 (+1) 72 18 19 17 369 aminotransferase; class V [Ruegeria pomeroyi DSS-3] AAV95193.1 44 13 16 18 370 hypothetical protein SPO3713 [Ruegeria pomeroyi DSS-3] AAV96934.1 61 17 18 16 371 unnamed protein product [Ruegeria pomeroyi DSS-3] CBV30776.1 74 16 17 15 372 RecName: Full=Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Short=ACCase subunit alpha; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha Q5LME7.1 35 18 17 18 373 CBS domain-containing protein [Ruegeria pomeroyi] WP_011047923.1 15 16 12 14 374 acyl-CoA synthetase [Ruegeria pomeroyi] WP_030003249.1 69 20 15 19 375 crotonyl-CoA reductase [Ruegeria pomeroyi DSS-3] AAV93688.1 47 18 18 15 376 pyruvate dehydrogenase complex; E3 component; lipoamide dehydrogenase; putative [Ruegeria pomeroyi DSS-3] AAV95488.1 50 16 16 13 377 PPIC-type PPIASE domain protein [Ruegeria pomeroyi DSS-3] AAV95710.1 45 13 15 14 378 oligopeptide/dipeptide ABC transporter; periplasmic substrate-binding protein [Ruegeria pomeroyi DSS-3] AAV96994.1 57 17 18 19 379 RecName: Full=Membrane protein insertase YidC; AltName: Full=Foldase YidC; AltName: Full=Membrane integrase YidC; AltName: Full=Membrane protein YidC Q5LW11.1 67 16 16 14 380 transcription elongation factor GreA [Ruegeria pomeroyi] WP_011046073.1 17 14 15 14 381 CoA transferase subunit A [Ruegeria pomeroyi] WP_011048775.1 26 10 14 14 382 TRAP transporter substrate-binding protein [Ruegeria pomeroyi] WP_011049345.1 35 14 13 14 383 glycine betaine/proline ABC transporter; periplasmic substrate-binding protein [Ruegeria pomeroyi DSS-3] AAV94431.1 (+1) 36 13 13 13 384 hypothetical protein SPO2988 [Ruegeria pomeroyi DSS-3] AAV96226.1 41 14 12 11 385 unnamed protein product [Ruegeria pomeroyi DSS-3] CBF75561.1 55 13 15 14 386 RecName: Full=UDP-N-acetylglucosamine 1-carboxyvinyltransferase; AltName: Full=Enoylpyruvate transferase; AltName: Full=UDP-N-acetylglucosamine enolpyruvyl transferase; Short=EPT Q5LL90.1 45 16 16 18 387 xylulokinase [Ruegeria pomeroyi] WP_011046604.1 50 14 14 15 388 hypothetical protein [Ruegeria pomeroyi] WP_011047599.1 31 15 18 21 389 hypothetical protein [Ruegeria pomeroyi] WP_030003243.1 42 13 13 15 390 PPIC-type PPIASE domain protein [Ruegeria pomeroyi DSS-3] AAV93389.1 (+1) 30 11 13 12 391 ABC transporter; periplasmic substrate-binding protein [Ruegeria pomeroyi DSS-3] AAV95067.1 (+1) 39 13 12 13 392 peptide/nickel/opine uptake family ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV96236.1 60 21 15 17 393 glutamate--cysteine ligase [Ruegeria pomeroyi DSS-3] AAV96849.1 51 16 19 17 394 shikimate 5-dehydrogenase [Ruegeria pomeroyi DSS-3] AAV97104.1 30 15 16 18 395 RecName: Full=Adenine deaminase; Short=Adenase; Short=Adenine aminase Q5LM18.2 64 17 16 18 396 iron-containing alcohol dehydrogenase [Ruegeria pomeroyi] WP_011048312.1 40 12 11 13 397 hypothetical protein [Ruegeria pomeroyi] WP_030003219.1 14 7 6 7 398 nucleoside diphosphate kinase [Ruegeria pomeroyi DSS-3] AAV95698.1 15 7 7 8 399 polyamine ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV96698.1 (+1) 42 12 12 11 400 unnamed protein product [Ruegeria pomeroyi DSS-3] CBG19794.1 21 13 14 13 401 ribonuclease D [Ruegeria pomeroyi] WP_011047890.1 43 17 17 15 402 MULTISPECIES: 30S ribosomal protein S6 [Ruegeria] WP_011048000.1 14 7 7 8 403 M23/M37 peptidase/aminotransferase; class III [Ruegeria pomeroyi DSS-3] AAV94096.1 111 21 17 17 404 branched-chain amino acid ABC transporter; periplasmic substrate-binding protein [Ruegeria pomeroyi DSS-3] AAV94130.1 (+1) 47 17 16 16 405 oligopeptide/dipeptide ABC transporter; periplasmic substrate-binding protein [Ruegeria pomeroyi DSS-3] AAV94944.1 68 13 15 13 406 RecName: Full=ATP-dependent protease ATPase subunit HslU; AltName: Full=Unfoldase HslU Q5LLP0.1 48 16 16 14 407 RecName: Full=50S ribosomal protein L16 Q5LW55.1 16 8 10 8 408 MoxR family ATPase [Ruegeria pomeroyi] WP_011045910.1 36 14 13 11 409 aminotransferase [Ruegeria pomeroyi] WP_011046912.1 49 18 17 14 410 MULTISPECIES: acetolactate synthase small subunit [Ruegeria] WP_011048284.1 20 14 15 15 411 tripartite tricarboxylate transporter solute-binding protein TctC [Ruegeria pomeroyi DSS-3] AAV93512.1 34 17 17 18 412 ribosomal protein L25 [Ruegeria pomeroyi DSS-3] AAV94117.1 22 10 10 10 413 3-oxoacyl-(acyl-carrier-protein) synthase III [Ruegeria pomeroyi DSS-3] AAV95745.1 34 12 12 12 414 tetratricopeptide repeat protein [Ruegeria pomeroyi] WP_011048787.1 31 13 15 14 415 CTP synthase [Ruegeria pomeroyi DSS-3] AAV94601.1 61 11 17 16 416 carbamoyl-phosphate synthase; small subunit [Ruegeria pomeroyi DSS-3] AAV94665.1 42 16 14 14 417 CobW [Ruegeria pomeroyi DSS-3] AAV96103.1 38 13 11 10 418 RecName: Full=30S ribosomal protein S14 Q5LW45.1 12 12 11 12 419 hypothetical protein [Ruegeria pomeroyi] WP_011047588.1 23 7 8 6 420 xanthine dehydrogenase family protein molybdopterin-binding subunit [Ruegeria pomeroyi] WP_011048713.1 82 18 19 16 421 FAD-dependent oxidoreductase [Ruegeria pomeroyi] WP_011049415.1 42 14 14 17 422 galactose mutarotase [Ruegeria pomeroyi] WP_044027926.1 35 15 13 11 423 ribosomal protein S8 [Ruegeria pomeroyi DSS-3] AAV93816.1 14 10 9 9 424 DNA topoisomerase IV; B subunit [Ruegeria pomeroyi DSS-3] AAV94545.1 72 19 19 18 425 aminotransferase family protein [Ruegeria pomeroyi DSS-3] AAV94658.1 40 16 14 13 426 ATP synthase delta chain [Ruegeria pomeroyi DSS-3] AAV96400.1 20 11 10 13 427 aldehyde dehydrogenase family protein [Ruegeria pomeroyi DSS-3] AAV96595.1 83 16 20 20 428 peptidase; M16 family [Ruegeria pomeroyi DSS-3] AAV96598.1 (+1) 50 16 16 15 429 tetratricopeptide repeat protein [Ruegeria pomeroyi] WP_044028358.1 23 14 13 14 430 serine/threonine protein kinase [Ruegeria pomeroyi DSS-3] AAV94359.1 74 14 17 18 431 gamma-glutamyltranspeptidase; putative [Ruegeria pomeroyi DSS-3] AAV96638.1 55 14 18 18 432 NAD+ synthase [Ruegeria pomeroyi] WP_011046187.1 61 14 16 17 433 superoxide dismutase [Ruegeria pomeroyi] WP_011048057.1 22 14 11 8 434 manganese-dependent inorganic pyrophosphatase [Ruegeria pomeroyi] WP_011048837.1 33 13 18 13 435 peptidase T [Ruegeria pomeroyi] WP_011049501.1 44 11 14 14 436 tryptophan synthase; alpha subunit [Ruegeria pomeroyi DSS-3] AAV94120.1 27 16 12 15 437 dihydroxy-acid dehydratase; putative [Ruegeria pomeroyi DSS-3] AAV95664.1 65 13 14 14 438 amidase family protein [Ruegeria pomeroyi DSS-3] AAV96644.1 46 16 15 15 439 dihydrodipicolinate synthase [Ruegeria pomeroyi DSS-3] AAV96781.1 30 11 14 13 440 toluene tolerance family protein [Ruegeria pomeroyi DSS-3] AAV96947.1 22 12 13 13 441 carboxypeptidase M32 [Ruegeria pomeroyi] WP_011047779.1 54 15 17 18 442 N-6 DNA methylase [Ruegeria pomeroyi] WP_011048432.1 102 18 17 18 443 5'-nucleotidase/apyrase family protein [Ruegeria pomeroyi] WP_011048604.1 55 13 13 17 444 3-oxoacid CoA-transferase subunit B [Ruegeria pomeroyi] WP_011048776.1 22 11 11 13 445 ATP-binding protein [Ruegeria pomeroyi] WP_011049006.1 71 18 19 14 446 histidyl-tRNA synthetase [Ruegeria pomeroyi DSS-3] AAV93975.1 54 15 16 16 447 hypothetical protein SPO1085 [Ruegeria pomeroyi DSS-3] AAV94385.1 28 14 14 14 448 hypothetical protein SPO2848 [Ruegeria pomeroyi DSS-3] AAV96089.1 (+1) 19 10 12 11 449 DUF3576 domain-containing protein [Ruegeria pomeroyi] WP_011049114.1 18 10 10 10 450 peptidoglycan-binding protein [Ruegeria pomeroyi] WP_051420384.1 43 12 15 11 451 methylamine utilization protein MauG; putative [Ruegeria pomeroyi DSS-3] AAV94163.1 46 10 12 9 452 aminotransferase; class III [Ruegeria pomeroyi DSS-3] AAV96697.1 51 18 15 12 453 ParB/RepB/Spo0J family partition protein [Ruegeria pomeroyi] WP_011045776.1 32 12 14 15 454 FAD-dependent oxidoreductase [Ruegeria pomeroyi] WP_011046386.1 93 17 18 16 455 30S ribosomal protein S9 [Ruegeria pomeroyi] WP_011047427.1 17 7 7 6 456 adenylosuccinate lyase family protein [Ruegeria pomeroyi] WP_011242209.1 46 16 16 14 457 organic hydroperoxide resistance protein [Ruegeria pomeroyi] WP_044027792.1 14 7 9 9 458 TRAP dicarboxylate transporter; DctP subunit; putative [Ruegeria pomeroyi DSS-3] AAV95093.1 (+2) 36 15 13 11 459 tryptophan--tRNA ligase [Ruegeria pomeroyi] WP_011046153.1 37 13 12 12 460 MULTISPECIES: rod shape-determining protein [Ruegeria] WP_011046181.1 37 14 12 12 461 outer membrane protein assembly factor BamD [Ruegeria pomeroyi] WP_011046949.1 32 13 14 14 462 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD [Ruegeria pomeroyi] WP_011047296.1 31 13 15 10 463 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase [Ruegeria pomeroyi DSS-3] AAV94958.1 28 11 12 12 464 sugar ABC transporter; periplasmic sugar-binding protein [Ruegeria pomeroyi DSS-3] AAV95118.1 45 13 14 15 465 ribosomal protein L27 [Ruegeria pomeroyi DSS-3] AAV95265.1 9 4 4 4 466 AMP-binding enzyme [Ruegeria pomeroyi DSS-3] AAV96523.1 73 8 10 10 467 F0F1 ATP synthase subunit epsilon [Ruegeria pomeroyi] WP_011048851.1 14 11 11 12 468 insulinase family protein [Ruegeria pomeroyi] WP_011049053.1 47 14 14 13 469 preprotein translocase; YajC subunit [Ruegeria pomeroyi DSS-3] AAV95584.1 (+1) 13 12 11 12 470 acetyl-CoA acyltransferase/thiolase [Ruegeria pomeroyi DSS-3] AAV96159.1 43 15 16 13 471 aminotransferase; classes I and II [Ruegeria pomeroyi DSS-3] AAV96643.1 43 12 13 13 472 hypothetical protein SPO3852 [Ruegeria pomeroyi DSS-3] AAV97066.1 (+1) 46 11 12 13 473 (dimethylallyl)adenosine tRNA methylthiotransferase (plasmid) [Ruegeria pomeroyi DSS-3] AAV97143.1 (+1) 51 15 13 15 474 citramalate synthase [Ruegeria pomeroyi] WP_011047854.1 59 9 17 16 475 indole-3-glycerol phosphate synthase TrpC [Ruegeria pomeroyi] WP_011047874.1 29 12 13 14 476 ParB N-terminal domain-containing protein [Ruegeria pomeroyi] WP_011242082.1 41 11 13 14 477 adenylate kinase [Ruegeria pomeroyi DSS-3] AAV93824.1 23 12 13 11 478 translation elongation factor G; putative [Ruegeria pomeroyi DSS-3] AAV96758.1 72 15 15 15 479 RecName: Full=2;3;4;5-tetrahydropyridine-2;6-dicarboxylate N-succinyltransferase; AltName: Full=Tetrahydrodipicolinate N-succinyltransferase; Short=THDP succinyltransferase; Short=THP succinyltransferase; Short=Tetrahydropicolinate succinylase Q5LN75.1 29 10 12 9 480 polyprenyl synthetase family protein [Ruegeria pomeroyi] WP_011046080.1 36 17 12 14 481 acetyl-CoA carboxylase biotin carboxyl carrier protein [Ruegeria pomeroyi] WP_011046759.1 17 9 9 9 482 YebC/PmpR family DNA-binding transcriptional regulator [Ruegeria pomeroyi] WP_011046819.1 27 9 10 8 483 amidase [Ruegeria pomeroyi] WP_011048288.1 49 16 16 16 484 FAD-binding oxidoreductase [Ruegeria pomeroyi] WP_011241874.1 53 13 13 12 485 dihydroorotase; multifunctional complex type [Ruegeria pomeroyi DSS-3] AAV93602.1 46 15 16 17 486 phosphoribosylamine--glycine ligase [Ruegeria pomeroyi DSS-3] AAV94633.1 44 13 13 11 487 membrane-associated zinc metalloprotease; putative [Ruegeria pomeroyi DSS-3] AAV94953.1 48 12 13 13 488 aminotransferase; classes I and II [Ruegeria pomeroyi DSS-3] AAV95837.1 (+1) 42 13 11 13 489 metallo-beta-lactamase family protein [Ruegeria pomeroyi DSS-3] AAV96001.1 60 13 15 11 490 NADH dehydrogenase I; B subunit [Ruegeria pomeroyi DSS-3] AAV96026.2 (+1) 19 8 9 10 491 aldehyde dehydrogenase family protein [Ruegeria pomeroyi] WP_011045870.1 51 15 16 16 492 homogentisate 1;2-dioxygenase [Ruegeria pomeroyi] WP_011046437.1 50 11 13 13 493 Grx4 family monothiol glutaredoxin [Ruegeria pomeroyi] WP_011047601.1 13 5 5 5 494 NADP-dependent malic enzyme [Ruegeria pomeroyi] WP_011048632.1 82 14 17 15 495 fumarylacetoacetate hydrolase family protein [Ruegeria pomeroyi] WP_011049369.1 25 10 9 12 496 capsule biosynthesis protein [Ruegeria pomeroyi] WP_044027942.1 63 11 14 13 497 xylose repressor; putative [Ruegeria pomeroyi DSS-3] AAV94165.1 (+1) 43 15 14 13 498 hypothetical protein SPO2148 [Ruegeria pomeroyi DSS-3] AAV95416.1 49 10 12 11 499 NADH-quinone oxidoreductase; C subunit [Ruegeria pomeroyi DSS-3] AAV96025.1 23 10 13 11 500 pilus assembly protein CpaC [Ruegeria pomeroyi DSS-3] AAV96322.1 (+1) 50 8 11 11 501 histidinol-phosphate aminotransferase [Ruegeria pomeroyi DSS-3] AAV96412.1 (+1) 40 14 16 15 502 hypothetical protein [Ruegeria pomeroyi] WP_011047164.1 78 12 11 15 503 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [Ruegeria pomeroyi] WP_011048725.1 21 7 8 8 504 glycoside hydrolase family 25 protein [Ruegeria pomeroyi] WP_011048948.1 31 12 14 12 505 class II fumarate hydratase [Ruegeria pomeroyi] WP_030003209.1 50 16 15 15 506 acetyl-CoA acyltransferase/thiolase family protein [Ruegeria pomeroyi DSS-3] AAV94078.1 41 13 12 15 507 sterol carrier family protein [Ruegeria pomeroyi DSS-3] AAV94702.1 10 6 5 6 508 tonB domain protein; putative [Ruegeria pomeroyi DSS-3] AAV96345.1 40 6 5 6 509 unnamed protein product [Ruegeria pomeroyi DSS-3] CBF80623.1 71 13 13 13 510 RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA nucleotidyltransferase Q5LWF6.1 25 12 11 12 511 redox-regulated ATPase YchF [Ruegeria pomeroyi] WP_011046566.1 39 13 12 14 512 glutathione-dependent disulfide-bond oxidoreductase [Ruegeria pomeroyi] WP_011046702.1 33 12 12 12 513 2'-deoxycytidine 5'-triphosphate deaminase [Ruegeria pomeroyi] WP_011048205.1 39 13 16 15 514 aspartate kinase [Ruegeria pomeroyi] WP_011048729.1 45 13 13 12 515 MULTISPECIES: thioredoxin [Ruegeria] WP_011049545.1 11 7 6 7 516 ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Ruegeria pomeroyi DSS-3] AAV93406.1 (+1) 24 7 8 5 517 3-deoxy-8-phosphooctulonate synthase [Ruegeria pomeroyi DSS-3] AAV94252.1 29 11 7 10 518 3-hydroxybenzoate/3;4-dihydroxybenzoate TRAP transporter solute-binding protein [Ruegeria pomeroyi DSS-3] AAV95052.1 35 11 11 12 519 FeS assembly protein SufD [Ruegeria pomeroyi DSS-3] AAV95290.1 46 11 12 10 520 3-hydroxyisobutyrate dehydrogenase [Ruegeria pomeroyi DSS-3] AAV95479.1 29 11 11 11 521 Manganese ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV96592.1 29 12 12 11 522 PmbA [Ruegeria pomeroyi DSS-3] AAV96668.1 (+1) 48 10 11 13 523 hypothetical protein SPOA0072 (plasmid) [Ruegeria pomeroyi DSS-3] AAV97212.1 (+1) 18 9 9 9 524 methanethiol oxidase (plasmid) [Ruegeria pomeroyi DSS-3] AAV97403.1 49 13 12 14 525 amidohydrolase domain protein (plasmid) [Ruegeria pomeroyi DSS-3] AAV97448.1 (+1) 59 11 14 15 526 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I Q5LPS9.1 19 11 10 9 527 NADH:ubiquinone oxidoreductase subunit NDUFA12 [Ruegeria pomeroyi] WP_011046754.1 15 9 9 9 528 MoxR family ATPase [Ruegeria pomeroyi] WP_011048219.1 32 13 12 12 529 hypothetical protein [Ruegeria pomeroyi] WP_030003172.1 22 13 12 13 530 murein endopeptidase [Ruegeria pomeroyi DSS-3] AAV93452.1 33 11 14 11 531 MORN repeat protein [Ruegeria pomeroyi DSS-3] AAV93743.1 50 13 14 10 532 hypothetical protein SPO2326 [Ruegeria pomeroyi DSS-3] AAV95588.2 21 10 9 8 533 transglycosylase; Slt family [Ruegeria pomeroyi DSS-3] AAV96780.1 73 13 16 14 534 ornithine cyclodeaminase/mu-crystallin family protein [Ruegeria pomeroyi DSS-3] AAV97035.1 33 15 11 12 535 hypothetical protein SPOA0124 (plasmid) [Ruegeria pomeroyi DSS-3] AAV97261.1 109 11 13 9 536 unnamed protein product [Ruegeria pomeroyi DSS-3] CBF97294.1 85 10 12 13 537 RecName: Full=50S ribosomal protein L31 Q5LNE9.1 8 7 6 8 538 adenosine kinase [Ruegeria pomeroyi] WP_011049262.1 35 11 12 12 539 oxidoreductase; short chain dehydrogenase/reductase family [Ruegeria pomeroyi DSS-3] AAV95937.1 26 15 9 14 540 CBS domain protein (plasmid) [Ruegeria pomeroyi DSS-3] AAV97174.1 19 12 12 11 541 RecName: Full=30S ribosomal protein S16 Q5LNF2.1 13 5 5 5 542 RecName: Full=Phosphoribosylformylglycinamidine synthase subunit PurQ; Short=FGAM synthase; AltName: Full=Formylglycinamide ribonucleotide amidotransferase subunit I; Short=FGAR amidotransferase I; Short=FGAR-AT I; AltName: Full=Glutaminase PurQ; AltName: Full=Phosphoribosylformylglycinamidine synthase subunit I Q5LS78.1 23 11 9 11 543 ribonuclease D [Ruegeria pomeroyi] WP_011045856.1 23 10 11 11 544 protein-L-isoaspartate O-methyltransferase [Ruegeria pomeroyi] WP_011046981.1 23 8 8 9 545 MULTISPECIES: 50S ribosomal protein L32 [Ruegeria] WP_011048200.1 8 5 6 6 546 aldehyde dehydrogenase family protein [Ruegeria pomeroyi] WP_030003231.1 50 12 14 17 547 HU family DNA-binding protein [Ruegeria pomeroyi] WP_030003232.1 18 10 11 12 548 DNA repair protein RecN [Ruegeria pomeroyi DSS-3] AAV94503.1 58 13 14 12 549 spermidine/putrescine ABC transporter; periplasmic substrate-binding protein [Ruegeria pomeroyi DSS-3] AAV94893.1 37 11 10 10 550 uridylate kinase [Ruegeria pomeroyi DSS-3] AAV94947.1 27 13 10 8 551 gamma-glutamylisopropylamide synthetase; putative [Ruegeria pomeroyi DSS-3] AAV95853.1 50 14 15 11 552 SPFH domain/band 7 family protein [Ruegeria pomeroyi DSS-3] AAV95862.1 32 9 9 10 553 alanine racemase [Ruegeria pomeroyi DSS-3] AAV95915.1 (+1) 41 13 13 14 554 RNA pseudouridylate synthase family protein [Ruegeria pomeroyi DSS-3] AAV96222.1 42 11 9 8 555 TldD/PmbA family protein [Ruegeria pomeroyi DSS-3] AAV96312.1 50 11 10 14 556 histidinol dehydrogenase (plasmid) [Ruegeria pomeroyi DSS-3] AAV97336.1 46 13 13 16 557 unnamed protein product [Ruegeria pomeroyi DSS-3] CAW81294.1 30 9 9 10 558 RecName: Full=50S ribosomal protein L18 Q5LW42.1 13 8 8 8 559 RecName: Full=50S ribosomal protein L24 Q5LW47.1 11 7 8 8 560 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC [Ruegeria pomeroyi] WP_011046169.1 42 12 14 13 561 dihydroorotase [Ruegeria pomeroyi] WP_011048355.1 38 11 9 9 562 flavin reductase family protein [Ruegeria pomeroyi] WP_011048750.1 22 9 8 10 563 NYN domain-containing protein [Ruegeria pomeroyi] WP_011048896.1 22 14 12 10 564 peptidase; M48 family [Ruegeria pomeroyi DSS-3] AAV94244.1 25 11 10 8 565 MlrC domain protein [Ruegeria pomeroyi DSS-3] AAV94505.1 53 13 11 11 566 lipoprotein; putative [Ruegeria pomeroyi DSS-3] AAV94609.1 73 7 10 13 567 methylcrotonyl-CoA carboxylase; alpha subunit [Ruegeria pomeroyi DSS-3] AAV96030.1 67 13 12 12 568 glutamate synthase family protein [Ruegeria pomeroyi DSS-3] AAV96501.1 (+1) 58 12 12 13 569 decarboxylase family protein [Ruegeria pomeroyi DSS-3] AAV96569.1 (+1) 33 10 9 11 570 zinc-binding dehydrogenase [Ruegeria pomeroyi] WP_011047585.1 36 11 13 13 571 phosphoribosylformylglycinamidine cyclo-ligase [Ruegeria pomeroyi] WP_011047892.1 36 11 12 11 572 DNA-directed RNA polymerase subunit omega [Ruegeria pomeroyi] WP_011048894.1 13 8 9 9 573 heparinase II/III family protein [Ruegeria pomeroyi] WP_011049058.1 (+1) 63 13 12 12 574 hypothetical protein [Ruegeria pomeroyi] WP_011242120.1 22 11 12 8 575 adenylate kinase [Ruegeria pomeroyi] WP_030003208.1 24 12 11 10 576 sensor histidine kinase ChvG [Ruegeria pomeroyi DSS-3] AAV94017.1 62 14 16 12 577 hypothetical protein SPO0956 [Ruegeria pomeroyi DSS-3] AAV94261.1 21 7 7 8 578 RNA polymerase sigma-32 factor [Ruegeria pomeroyi DSS-3] AAV94696.1 34 12 12 14 579 TRAP dicarboxylate transporter; DctP subunit; putative [Ruegeria pomeroyi DSS-3] AAV95003.1 (+1) 37 10 13 13 580 HAD-superfamily subfamily IIA hydrolase; TIGR01459 [Ruegeria pomeroyi DSS-3] AAV96386.2 31 8 9 9 581 S1 RNA binding domain protein (plasmid) [Ruegeria pomeroyi DSS-3] AAV97440.1 82 12 13 13 582 ABC transporter ATP-binding protein [Ruegeria pomeroyi] WP_011046139.1 55 9 12 10 583 type I restriction endonuclease [Ruegeria pomeroyi] WP_011048434.1 125 11 15 14 584 hypothetical protein SPO1886 [Ruegeria pomeroyi DSS-3] AAV95165.1 11 10 9 8 585 carbonic anhydrase; putative [Ruegeria pomeroyi DSS-3] AAV96936.1 24 11 10 8 586 50S ribosomal protein L28 [Ruegeria pomeroyi] WP_011046722.1 10 6 6 7 587 MULTISPECIES: 2Fe-2S iron-sulfur cluster-binding protein [Ruegeria] WP_011047086.1 12 10 9 10 588 Lrp/AsnC family transcriptional regulator [Ruegeria pomeroyi] WP_011048333.1 17 8 8 9 589 transcription termination/antitermination protein NusG [Ruegeria pomeroyi] WP_011049196.1 20 7 9 8 590 MULTISPECIES: (2Fe-2S)-binding protein [Ruegeria] WP_011242190.1 17 8 11 9 591 peptidylprolyl isomerase [Ruegeria pomeroyi] WP_011242215.1 15 9 8 9 592 cold shock family protein [Ruegeria pomeroyi DSS-3] AAV93755.1 7 2 2 3 593 mesaconyl-CoA hydratase [Ruegeria pomeroyi DSS-3] AAV93673.1 37 14 10 11 594 multidrug resistance efflux pump; putative [Ruegeria pomeroyi DSS-3] AAV93953.1 45 13 10 11 595 FMN-dependent alpha-hydroxy acid dehydrogenase family protein [Ruegeria pomeroyi DSS-3] AAV94468.2 42 11 10 9 596 hypothetical protein SPO2680 [Ruegeria pomeroyi DSS-3] AAV95925.1 31 11 10 12 597 ribonuclease R [Ruegeria pomeroyi DSS-3] AAV96557.1 83 15 14 13 598 antioxidant; AhpC/Tsa family [Ruegeria pomeroyi DSS-3] AAV96957.1 17 6 8 8 599 3-methylmercaptopropionyl-CoA dehydrogenase [Ruegeria pomeroyi] WP_011049476.1 63 14 12 14 600 mechanosensitive ion channel family protein [Ruegeria pomeroyi DSS-3] AAV95199.1 (+1) 89 8 7 10 601 GTP-binding protein EngA [Ruegeria pomeroyi DSS-3] AAV95590.1 54 12 12 9 602 precorrin-8X methylmutase [Ruegeria pomeroyi DSS-3] AAV96106.1 22 10 11 10 603 ribosomal protein S15 [Ruegeria pomeroyi DSS-3] AAV97054.1 10 5 5 5 604 unnamed protein product [Ruegeria pomeroyi DSS-3] CBN67634.1 25 12 11 12 605 unnamed protein product [Ruegeria pomeroyi DSS-3] CBV04788.1 42 10 13 14 606 2-polyprenylphenol 6-hydroxylase [Ruegeria pomeroyi] WP_011045915.1 56 10 9 14 607 H-NS histone family protein [Ruegeria pomeroyi] WP_011046128.1 11 8 9 8 608 aminoacyl-tRNA hydrolase [Ruegeria pomeroyi] WP_011046560.1 26 8 10 8 609 S-methyl-5'-thioadenosine phosphorylase [Ruegeria pomeroyi] WP_011048754.1 31 11 10 10 610 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Ruegeria pomeroyi] WP_011048897.1 34 9 13 11 611 succinyl-diaminopimelate desuccinylase [Ruegeria pomeroyi] WP_011049015.1 40 9 12 11 612 zinc ABC transporter substrate-binding protein [Ruegeria pomeroyi] WP_011049049.1 34 10 7 6 613 hypothetical protein [Ruegeria pomeroyi] WP_044028530.1 167 10 16 16 614 oxidoreductase; short chain dehydrogenase/reductase family [Ruegeria pomeroyi DSS-3] AAV93844.1 (+1) 27 11 9 11 615 efflux transporter; RND family; MFP subunit [Ruegeria pomeroyi DSS-3] AAV94685.1 (+1) 46 10 11 14 616 thiamine-phosphate pyrophosphorylase; putative [Ruegeria pomeroyi DSS-3] AAV95327.1 22 11 11 12 617 penicillin amidase family protein [Ruegeria pomeroyi DSS-3] AAV95349.1 90 17 14 12 618 hydroxyacylglutathione hydrolase [Ruegeria pomeroyi DSS-3] AAV96403.1 28 11 12 10 619 hypothetical protein SPO3318 [Ruegeria pomeroyi DSS-3] AAV96545.1 32 10 12 13 620 RecName: Full=30S ribosomal protein S18 Q5LR49.1 9 4 4 4 621 RecName: Full=NDP-polyphosphate phosphotransferase 2; AltName: Full=Polyphosphate kinase PPK2 2; AltName: Full=RpPPK2-2 Q5LU04.1 40 10 13 11 622 single-stranded DNA-binding protein [Ruegeria pomeroyi] WP_011047374.1 19 9 10 7 623 M20 family metallopeptidase [Ruegeria pomeroyi] WP_011048177.1 42 11 9 10 624 TRAP transporter substrate-binding protein [Ruegeria pomeroyi] WP_011048309.1 38 12 9 11 625 peptidoglycan -binding protein [Ruegeria pomeroyi] WP_011048861.1 83 8 16 15 626 type I polyketide synthase-like protein [Ruegeria pomeroyi DSS-3] AAV94152.1 164 13 13 16 627 polyhydroxyalkanoate synthesis repressor PhaR [Ruegeria pomeroyi DSS-3] AAV94586.1 21 10 10 10 628 xanthine-guanine phosphoribosyltransferase [Ruegeria pomeroyi DSS-3] AAV95411.1 19 8 8 7 629 TRAP dicarboxylate transporter; DctP subunit; putative [Ruegeria pomeroyi DSS-3] AAV95687.1 (+1) 43 8 7 9 630 hypothetical protein SPO2968 [Ruegeria pomeroyi DSS-3] AAV96207.1 (+1) 31 9 9 10 631 outer membrane protein OmpA [Ruegeria pomeroyi DSS-3] AAV96323.1 (+1) 23 9 9 7 632 MOSC domain protein [Ruegeria pomeroyi DSS-3] AAV96339.1 21 7 9 8 633 hypothetical protein SPO3320 [Ruegeria pomeroyi DSS-3] AAV96547.1 26 10 12 9 634 RecName: Full=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin); AltName: Full=1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase Q5LQ99.1 40 14 14 10 635 RecName: Full=N-acetyl-gamma-glutamyl-phosphate reductase; Short=AGPR; AltName: Full=N-acetyl-glutamate semialdehyde dehydrogenase; Short=NAGSA dehydrogenase Q5LS92.1 37 13 10 9 636 branched-chain amino acid aminotransferase [Ruegeria pomeroyi] WP_011046015.1 32 10 9 11 637 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2;6-diaminopimelate ligase [Ruegeria pomeroyi] WP_011046925.1 52 14 13 11 638 O-succinylhomoserine sulfhydrylase [Ruegeria pomeroyi] WP_011047089.1 42 11 11 13 639 HlyD family efflux transporter periplasmic adaptor subunit [Ruegeria pomeroyi] WP_011047234.1 45 11 14 17 640 hypothetical protein [Ruegeria pomeroyi] WP_011047655.1 34 10 11 11 641 lytic murein transglycosylase [Ruegeria pomeroyi] WP_011049171.1 46 13 13 12 642 hypothetical protein SPO0716 [Ruegeria pomeroyi DSS-3] AAV94022.1 33 11 10 11 643 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Ruegeria pomeroyi DSS-3] AAV94479.1 48 12 13 14 644 acetyltransferase; GNAT family [Ruegeria pomeroyi DSS-3] AAV95264.1 20 9 8 8 645 protein-export membrane protein SecD [Ruegeria pomeroyi DSS-3] AAV95583.1 59 13 13 10 646 XdhC/CoxI family protein [Ruegeria pomeroyi DSS-3] AAV95885.1 (+1) 34 12 10 12 647 DnaJ domain protein [Ruegeria pomeroyi DSS-3] AAV96091.1 24 8 8 10 648 2';3'-cyclic-nucleotide 2'-phosphodiesterase; putative [Ruegeria pomeroyi DSS-3] AAV96767.1 66 12 14 10 649 alkylhydroperoxidase AhpD family core domain protein [Ruegeria pomeroyi DSS-3] AAV96978.1 21 10 10 10 650 OmpA family protein (plasmid) [Ruegeria pomeroyi DSS-3] AAV97145.1 20 7 9 8 651 unnamed protein product [Ruegeria pomeroyi DSS-3] CBV24051.1 28 11 10 11 652 response regulator [Ruegeria pomeroyi] WP_011046013.1 26 4 5 4 653 NAD(P)/FAD-dependent oxidoreductase [Ruegeria pomeroyi] WP_011046749.1 44 9 11 11 654 FCD domain-containing protein [Ruegeria pomeroyi] WP_011047290.1 27 9 8 10 655 sarcosine oxidase subunit alpha family protein [Ruegeria pomeroyi] WP_011047480.1 105 11 13 13 656 MULTISPECIES: RNA chaperone Hfq [Rhodobacterales] WP_011047807.1 9 8 7 8 657 lytic murein transglycosylase [Ruegeria pomeroyi] WP_011048916.1 42 10 9 10 658 leucyl aminopeptidase family protein [Ruegeria pomeroyi] WP_030003270.1 48 11 9 12 659 polyphosphate kinase 2; putative [Ruegeria pomeroyi DSS-3] AAV95009.1 (+1) 35 11 9 11 660 fatty acid/phospholipid synthesis protein PlsX [Ruegeria pomeroyi DSS-3] AAV95744.1 39 11 11 10 661 amidase family protein [Ruegeria pomeroyi DSS-3] AAV96179.1 51 10 9 12 662 soluble pyridine nucleotide transhydrogenase [Ruegeria pomeroyi DSS-3] AAV97042.1 53 10 11 12 663 hypothetical protein SPO2973a [Ruegeria pomeroyi DSS-3] AHB86029.1 15 7 8 8 664 RecName: Full=Elongation factor P; Short=EF-P Q5LU15.1 21 7 6 5 665 RecName: Full=30S ribosomal protein S19 Q5LW58.1 10 8 5 6 666 ribulose-phosphate 3-epimerase [Ruegeria pomeroyi] WP_011046528.1 24 8 9 9 667 DUF853 family protein [Ruegeria pomeroyi] WP_011047665.1 56 13 11 11 668 anthranilate synthase component I [Ruegeria pomeroyi] WP_011047869.1 55 10 10 12 669 efflux RND transporter permease subunit [Ruegeria pomeroyi] WP_011048049.1 136 13 12 10 670 LysM peptidoglycan-binding domain-containing protein [Ruegeria pomeroyi] WP_011048053.1 56 10 10 11 671 DUF934 domain-containing protein [Ruegeria pomeroyi] WP_011048338.1 15 10 7 8 672 hydroxymethylglutaryl-CoA lyase [Ruegeria pomeroyi] WP_011048487.1 30 10 10 13 673 L-aspartate oxidase [Ruegeria pomeroyi] WP_011048934.1 53 13 12 15 674 Zn-dependent hydrolase [Ruegeria pomeroyi] WP_011048987.1 42 11 10 8 675 fumarylacetoacetase [Ruegeria pomeroyi DSS-3] AAV93993.1 45 10 10 9 676 glutaryl-CoA dehydrogenase [Ruegeria pomeroyi DSS-3] AAV95231.2 45 11 7 10 677 2;4-dienoyl-CoA reductase [Ruegeria pomeroyi DSS-3] AAV96811.1 72 10 11 14 678 LPS export ABC transporter ATP-binding protein [Ruegeria pomeroyi] WP_011045852.1 28 12 11 11 679 1-acyl-sn-glycerol-3-phosphate acyltransferase [Ruegeria pomeroyi] WP_011046100.1 27 9 8 9 680 phenylacetic acid degradation bifunctional protein PaaZ [Ruegeria pomeroyi] WP_011046484.1 72 12 8 9 681 aspartate aminotransferase family protein [Ruegeria pomeroyi] WP_011046711.1 41 11 11 10 682 ornithine carbamoyltransferase [Ruegeria pomeroyi] WP_011046712.1 34 9 11 9 683 cell division protein ZapA [Ruegeria pomeroyi] WP_011047600.1 14 9 11 11 684 glutamine-hydrolyzing GMP synthase [Ruegeria pomeroyi] WP_011047835.1 58 10 11 10 685 alpha-aminoadipic semialdehyde dehydrogenase [Ruegeria pomeroyi DSS-3] AAV93560.1 53 7 8 9 686 imidazole glycerol phosphate synthase; glutamine amidotransferase subunit [Ruegeria pomeroyi DSS-3] AAV94461.1 23 9 9 8 687 3-hydroxyacyl-CoA dehydrogenase; type II [Ruegeria pomeroyi DSS-3] AAV95739.1 26 11 9 12 688 glutathione S-transferase family protein [Ruegeria pomeroyi DSS-3] AAV96661.1 22 10 11 9 689 acyl-CoA/acyl-ACP dehydrogenase [Ruegeria pomeroyi] WP_011046444.1 62 11 12 11 690 SPOR domain-containing protein [Ruegeria pomeroyi] WP_011048437.1 31 11 11 8 691 peptide-methionine (S)-S-oxide reductase MsrA [Ruegeria pomeroyi] WP_011049418.1 19 6 7 7 692 ribosome recycling factor [Ruegeria pomeroyi DSS-3] AAV94949.1 21 8 8 8 693 cytochrome c-type biogenesis protein CycH [Ruegeria pomeroyi DSS-3] AAV95611.1 44 9 12 11 694 peptide chain release factor 3 [Ruegeria pomeroyi DSS-3] AAV95940.1 60 11 12 9 695 pyridoxal phosphate biosynthetic protein PdxJ [Ruegeria pomeroyi DSS-3] AAV96436.1 27 10 8 7 696 photosynthetic apparatus regulatory protein RegA [Ruegeria pomeroyi DSS-3] AAV97079.1 20 8 9 8 697 Na(+)-translocating NADH-quinone reductase subunit C (plasmid) [Ruegeria pomeroyi DSS-3] AAV97170.1 29 9 11 8 698 hypothetical protein SPOA0203 (plasmid) [Ruegeria pomeroyi DSS-3] AAV97337.1 123 9 10 11 699 acetylglutamate kinase [Ruegeria pomeroyi] WP_011046285.1 30 9 9 10 700 AAA family ATPase [Ruegeria pomeroyi] WP_011046440.1 30 11 11 10 701 ferredoxin family protein [Ruegeria pomeroyi] WP_011047156.1 13 6 5 5 702 precorrin-4 C(11)-methyltransferase [Ruegeria pomeroyi] WP_011048571.1 28 13 10 11 703 alpha/beta hydrolase [Ruegeria pomeroyi] WP_011242213.1 30 13 10 12 704 sarcosine oxidase subunit beta family protein [Ruegeria pomeroyi] WP_030003226.1 45 12 10 8 705 chaperonin; 33 kDa [Ruegeria pomeroyi DSS-3] AAV93355.1 35 8 11 11 706 lipoprotein; putative [Ruegeria pomeroyi DSS-3] AAV93622.1 22 8 7 5 707 ABC transporter; transmembrane ATP-binding protein; putative [Ruegeria pomeroyi DSS-3] AAV93889.1 115 11 14 10 708 glutamine synthetase family protein [Ruegeria pomeroyi DSS-3] AAV94589.1 51 9 10 10 709 hypothetical protein SPO1674 [Ruegeria pomeroyi DSS-3] AAV94959.1 27 8 9 9 710 cysteine desulfurase SufS [Ruegeria pomeroyi DSS-3] AAV95287.1 44 10 10 9 711 hypothetical protein SPO2289 [Ruegeria pomeroyi DSS-3] AAV95553.1 (+1) 46 9 11 10 712 hypothetical protein SPO2776 [Ruegeria pomeroyi DSS-3] AAV96017.1 14 10 9 9 713 LysM/phospholipid-binding domain protein [Ruegeria pomeroyi DSS-3] AAV96242.1 15 7 8 7 714 hypothetical protein SPO3498a [Ruegeria pomeroyi DSS-3] AHB86033.1 18 5 5 5 715 RecName: Full=Glutamate racemase Q5LS93.1 29 7 11 9 716 3'(2');5'-bisphosphate nucleotidase CysQ [Ruegeria pomeroyi] WP_011045811.1 28 12 11 11 717 polyphosphate kinase 2 [Ruegeria pomeroyi] WP_011045992.1 37 11 10 11 718 L;D-transpeptidase [Ruegeria pomeroyi] WP_011046199.1 21 9 8 7 719 ETC complex I subunit [Ruegeria pomeroyi] WP_011046242.1 12 10 6 7 720 50S ribosomal protein L30 [Ruegeria pomeroyi] WP_011046262.1 7 5 8 6 721 dihydropyrimidinase [Ruegeria pomeroyi] WP_011047516.1 53 11 9 11 722 porphobilinogen synthase [Ruegeria pomeroyi] WP_011047802.1 36 13 8 6 723 D-cysteine desulfhydrase [Ruegeria pomeroyi] WP_011241939.1 37 11 10 9 724 AAA family ATPase [Ruegeria pomeroyi] WP_011242083.1 49 7 8 10 725 oxidoreductase; aldo/keto reductase family [Ruegeria pomeroyi DSS-3] AAV93951.1 33 10 9 11 726 metallo-beta-lactamase family protein [Ruegeria pomeroyi DSS-3] AAV93991.1 35 9 9 8 727 hypothetical protein SPO1221 [Ruegeria pomeroyi DSS-3] AAV94516.1 (+1) 77 9 10 9 728 transcription-repair coupling factor [Ruegeria pomeroyi DSS-3] AAV95345.1 (+1) 126 12 11 9 729 nitrogen regulation protein ntrY [Ruegeria pomeroyi DSS-3] AAV95357.1 84 10 11 8 730 response regulator transcription factor [Ruegeria pomeroyi] WP_011046460.1 27 8 8 9 731 lipoyl synthase [Ruegeria pomeroyi] WP_011047828.1 35 12 11 9 732 extracellular solute-binding protein [Ruegeria pomeroyi] WP_044028270.1 64 14 11 9 733 SN-glycerol-3-phosphate ABC transporter; periplasmic SN-glycerol-3-phosphate-binding protein [Ruegeria pomeroyi DSS-3] AAV93565.1 (+1) 51 10 10 10 734 aspartate carbamoyltransferase [Ruegeria pomeroyi DSS-3] AAV93605.1 34 9 10 7 735 UvrABC system protein B [Ruegeria pomeroyi DSS-3] AAV93861.1 82 9 11 11 736 transcriptional repressor NrdR [Ruegeria pomeroyi DSS-3] AAV95033.1 18 8 7 7 737 lipoprotein; putative [Ruegeria pomeroyi DSS-3] AAV95434.1 19 7 7 8 738 ABC transporter; ATP-binding/permease protein [Ruegeria pomeroyi DSS-3] AAV95597.1 (+1) 67 7 9 12 739 hypothetical protein SPO2887 [Ruegeria pomeroyi DSS-3] AAV96128.1 51 7 9 13 740 hypothetical protein SPO2964 [Ruegeria pomeroyi DSS-3] AAV96205.1 23 7 6 7 741 GumN family protein [Ruegeria pomeroyi DSS-3] AAV96380.1 38 9 10 12 742 L-threonine aldolase; low-specificity; putative [Ruegeria pomeroyi DSS-3] AAV96391.1 37 10 9 10 743 ribosomal protein L10 [Ruegeria pomeroyi DSS-3] AAV96735.1 (+1) 19 6 8 8 744 folC bifunctional protein [Ruegeria pomeroyi DSS-3] AAV97032.1 45 10 10 10 745 unnamed protein product [Ruegeria pomeroyi DSS-3] CBC42201.1 20 8 8 7 746 TIGR02302 family protein [Ruegeria pomeroyi] WP_011046096.1 94 10 11 10 747 zinc-ribbon domain-containing protein [Ruegeria pomeroyi] WP_011046097.1 30 6 9 11 748 phenylacetate--CoA ligase [Ruegeria pomeroyi] WP_011046491.1 49 7 8 6 749 SDR family oxidoreductase [Ruegeria pomeroyi] WP_011049123.1 26 8 8 8 750 hydroxymethylbilane synthase [Ruegeria pomeroyi] WP_011049329.1 34 9 10 12 751 AMP nucleosidase [Ruegeria pomeroyi] WP_011049423.1 53 8 10 8 752 enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase [Ruegeria pomeroyi DSS-3] AAV94077.1 74 7 10 10 753 formate dehydrogenase; alpha subunit [Ruegeria pomeroyi DSS-3] AAV94139.1 100 8 10 7 754 oligopeptide/dipeptide ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV94941.1 81 10 11 9 755 orotate phosphoribosyltransferase [Ruegeria pomeroyi DSS-3] AAV95899.1 25 8 10 9 756 NAD(P)+ transhydrogenase; beta subunit [Ruegeria pomeroyi DSS-3] AAV96060.1 50 7 6 6 757 hypothetical protein SPO3347 [Ruegeria pomeroyi DSS-3] AAV96574.1 13 9 8 9 758 DNA-binding response regulator [Ruegeria pomeroyi DSS-3] AAV96652.1 26 6 6 6 759 prephenate dehydratase [Ruegeria pomeroyi DSS-3] AAV96764.1 31 10 7 5 760 multicopper oxidase domain protein [Ruegeria pomeroyi DSS-3] AAV96893.1 62 5 10 11 761 unnamed protein product [Ruegeria pomeroyi DSS-3] CBG18758.1 29 9 10 12 762 RecName: Full=Translation initiation factor IF-3 Q5LQ58.1 21 8 9 7 763 cytochrome c1 [Ruegeria pomeroyi] WP_011046035.1 31 5 5 6 764 dTMP kinase [Ruegeria pomeroyi] WP_011048439.1 24 8 9 10 765 EVE domain-containing protein [Ruegeria pomeroyi] WP_011049528.1 16 6 8 8 766 PhoH family protein [Ruegeria pomeroyi] WP_011241791.1 37 10 8 8 767 cobyrinate a;c-diamide synthase [Ruegeria pomeroyi] WP_084791005.1 46 13 8 9 768 xylose ABC transporter; permease protein [Ruegeria pomeroyi DSS-3] AAV94167.1 46 6 5 7 769 hypothetical protein SPO0915 [Ruegeria pomeroyi DSS-3] AAV94220.1 21 6 8 6 770 peptidase; M20/M25/M40 family [Ruegeria pomeroyi DSS-3] AAV94511.1 40 10 8 8 771 transcriptional regulator; CarD family [Ruegeria pomeroyi DSS-3] AAV94707.1 19 6 8 8 772 homoserine O-succinyltransferase [Ruegeria pomeroyi DSS-3] AAV95011.1 36 11 9 9 773 amidohydrolase family protein [Ruegeria pomeroyi DSS-3] AAV96050.1 41 8 7 12 774 5-oxoprolinase subunit A [Ruegeria pomeroyi DSS-3] AAV96882.1 27 8 10 10 775 RecName: Full=Ribosomal RNA small subunit methyltransferase H; AltName: Full=16S rRNA m(4)C1402 methyltransferase; AltName: Full=rRNA (cytosine-N(4)-)-methyltransferase RsmH Q5LU79.1 36 7 8 7 776 trypsin-like peptidase domain-containing protein [Ruegeria pomeroyi] WP_011046273.1 48 9 9 11 777 class I SAM-dependent DNA methyltransferase [Ruegeria pomeroyi] WP_011047656.1 109 11 12 12 778 urocanate hydratase [Ruegeria pomeroyi] WP_011047915.1 61 8 7 8 779 lytic transglycosylase domain-containing protein [Ruegeria pomeroyi] WP_011048002.1 18 6 6 5 780 universal stress protein [Ruegeria pomeroyi] WP_011048087.1 15 5 6 6 781 type I secretion target repeat protein [Ruegeria pomeroyi DSS-3] AAV93680.1 (+1) 76 9 10 9 782 universal stress family protein [Ruegeria pomeroyi DSS-3] AAV93704.1 (+1) 17 7 7 6 783 alcohol dehydrogenase; zinc-containing [Ruegeria pomeroyi DSS-3] AAV95168.1 36 7 6 8 784 B12 reduction/reactivation protein [Ruegeria pomeroyi DSS-3] AAV95313.1 73 8 10 11 785 isoquinoline 1-oxidoreductase; beta subunit; putative [Ruegeria pomeroyi DSS-3] AAV96068.1 79 10 9 8 786 hypothetical protein SPO3372 [Ruegeria pomeroyi DSS-3] AAV96599.1 (+1) 20 6 7 7 787 unnamed protein product [Ruegeria pomeroyi DSS-3] CBC62731.1 36 8 10 9 788 50S ribosomal protein L29 [Ruegeria pomeroyi] WP_011046253.1 8 5 7 7 789 3-hydroxybutyryl-CoA dehydrogenase [Ruegeria pomeroyi] WP_011046467.1 32 9 8 7 790 ABC transporter ATP-binding protein [Ruegeria pomeroyi] WP_011046871.1 24 6 7 6 791 L;D-transpeptidase family protein [Ruegeria pomeroyi] WP_011047660.1 59 8 11 11 792 TRAP transporter substrate-binding protein [Ruegeria pomeroyi] WP_011242112.1 36 10 9 8 793 30S ribosomal protein S12 methylthiotransferase RimO [Ruegeria pomeroyi] WP_044029031.1 51 8 10 9 794 OmpA domain protein [Ruegeria pomeroyi DSS-3] AAV93386.1 56 9 9 10 795 D-alanine--D-alanine ligase [Ruegeria pomeroyi DSS-3] AAV94497.1 33 8 8 8 796 carbon-monoxide dehydrogenase; small subunit [Ruegeria pomeroyi DSS-3] AAV94805.1 17 6 7 5 797 transcriptional regulator; LysR family [Ruegeria pomeroyi DSS-3] AAV95151.1 (+1) 35 9 9 10 798 CobN [Ruegeria pomeroyi DSS-3] AAV96104.1 118 9 6 11 799 benzoyl-CoA oxygenase; B subunit [Ruegeria pomeroyi DSS-3] AAV96922.1 55 9 9 8 800 unnamed protein product [Ruegeria pomeroyi DSS-3] CAY09721.1 37 10 8 10 801 unnamed protein product [Ruegeria pomeroyi DSS-3] CBG17506.1 32 9 9 11 802 ABC transporter ATP-binding protein [Ruegeria pomeroyi] WP_011046402.1 54 9 9 7 803 nucleoside hydrolase [Ruegeria pomeroyi] WP_011048179.1 33 7 8 5 804 type I methionyl aminopeptidase [Ruegeria pomeroyi] WP_011049440.1 29 9 7 9 805 tRNA 2-thiouridine(34) synthase MnmA [Ruegeria pomeroyi] WP_044028137.1 42 10 11 9 806 RecName: Full=30S ribosomal protein S17 Q5LW49.1 9 3 2 3 807 lipoprotein; putative [Ruegeria pomeroyi DSS-3] AAV93407.1 (+1) 19 6 6 6 808 hypothetical protein SPO0311 [Ruegeria pomeroyi DSS-3] AAV93629.1 36 10 8 12 809 phosphoribosylaminoimidazole carboxylase; catalytic subunit [Ruegeria pomeroyi DSS-3] AAV94198.1 17 9 7 7 810 hypothetical protein SPO1069 [Ruegeria pomeroyi DSS-3] AAV94369.1 77 8 6 9 811 pyridine nucleotide-disulfide oxidoreductase family protein [Ruegeria pomeroyi DSS-3] AAV95055.2 46 8 8 8 812 phospholipase; patatin-like family [Ruegeria pomeroyi DSS-3] AAV95335.1 (+1) 37 8 8 8 813 D-beta-hydroxybutyrate dehydrogenase [Ruegeria pomeroyi DSS-3] AAV96064.1 26 9 11 9 814 hypothetical protein SPO3142 [Ruegeria pomeroyi DSS-3] AAV96377.1 51 9 10 9 815 guanosine-3';5'-bis(Diphosphate) 3'-pyrophosphohydrolase; putative [Ruegeria pomeroyi DSS-3] AAV96438.2 80 11 11 11 816 hypothetical protein SPO3502 [Ruegeria pomeroyi DSS-3] AAV96727.1 31 5 8 7 817 hypothetical protein SPO3685 [Ruegeria pomeroyi DSS-3] AAV96906.1 46 7 9 8 818 hypothetical protein SPO3814 [Ruegeria pomeroyi DSS-3] AAV97028.1 29 5 7 6 819 unnamed protein product [Ruegeria pomeroyi DSS-3] CBN67510.1 51 8 11 9 820 RecName: Full=50S ribosomal protein L22 Q5LW57.1 14 7 6 6 821 MULTISPECIES: 30S ribosomal protein S12 [Rhodobacterales] WP_005862801.1 14 7 5 4 822 KpsF/GutQ family sugar-phosphate isomerase [Ruegeria pomeroyi] WP_011045855.1 34 11 9 9 823 adenylate/guanylate cyclase domain-containing protein [Ruegeria pomeroyi] WP_011046439.1 46 7 9 9 824 aldehyde dehydrogenase [Ruegeria pomeroyi] WP_011046624.1 34 8 7 8 825 glutamate 5-kinase [Ruegeria pomeroyi] WP_011047716.1 39 9 9 10 826 aminotransferase [Ruegeria pomeroyi] WP_011047867.1 42 8 10 10 827 replicative DNA helicase [Ruegeria pomeroyi] WP_011048357.1 55 9 9 8 828 SapC family protein [Ruegeria pomeroyi] WP_011048419.1 29 7 10 9 829 histidinol-phosphatase [Ruegeria pomeroyi] WP_011048657.1 28 9 10 7 830 glutamine--fructose-6-phosphate transaminase (isomerizing) [Ruegeria pomeroyi] WP_011241921.1 66 8 9 10 831 oligopeptide ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV94509.1 (+1) 61 8 9 9 832 hydrolase; alpha/beta fold family [Ruegeria pomeroyi DSS-3] AAV94550.1 33 9 8 11 833 oxidoreductase; aldo/keto reductase family [Ruegeria pomeroyi DSS-3] AAV94720.1 38 7 8 9 834 transcriptional regulator; LysR family [Ruegeria pomeroyi DSS-3] AAV95468.1 33 8 9 9 835 dihydroorotate dehydrogenase [Ruegeria pomeroyi DSS-3] AAV96148.1 (+1) 37 10 9 11 836 sulfatase family protein [Ruegeria pomeroyi DSS-3] AAV96818.1 63 10 11 5 837 hypothetical protein SPO3623 [Ruegeria pomeroyi DSS-3] AAV96847.1 12 7 7 7 838 ABC transporter; permease protein [Ruegeria pomeroyi DSS-3] AAV97029.1 (+1) 116 7 8 7 839 thiamine biosynthesis lipoprotein ApbE (plasmid) [Ruegeria pomeroyi DSS-3] AAV97176.1 (+1) 39 8 8 9 840 translation initiation factor IF-1 (plasmid) [Ruegeria pomeroyi DSS-3] AAV97216.1 8 7 6 5 841 unnamed protein product [Ruegeria pomeroyi DSS-3] CBG09981.1 53 10 8 11 842 RecName: Full=Bifunctional uridylyltransferase/uridylyl-removing enzyme; Short=UTase/UR; AltName: Full=Bifunctional [protein-PII] modification enzyme; AltName: Full=Bifunctional nitrogen sensor protein; Includes: RecName: Full=[Protein-PII] uridylyltransferase; Short=PII uridylyltransferase; Short=UTase; Includes: RecName: Full=[Protein-PII]-UMP uridylyl-removing enzyme; Short=UR Q5LWE5.1 (+1) 103 7 8 9 843 chorismate synthase [Ruegeria pomeroyi] WP_011046029.1 39 7 7 6 844 MULTISPECIES: integration host factor subunit beta [Ruegeria] WP_011046553.1 11 5 4 4 845 GTPase ObgE [Ruegeria pomeroyi] WP_011047717.1 37 8 9 9 846 3-hydroxybutyrate dehydrogenase [Ruegeria pomeroyi] WP_011047791.1 27 8 8 8 847 HAD family hydrolase [Ruegeria pomeroyi] WP_011048450.1 24 6 6 5 848 CoA transferase [Ruegeria pomeroyi] WP_011048586.1 42 5 6 7 849 fumarylacetoacetate hydrolase family protein [Ruegeria pomeroyi] WP_011241809.1 31 7 7 7 850 FAD-dependent oxidoreductase [Ruegeria pomeroyi] WP_030003180.1 60 8 9 7 851 NUDIX domain-containing protein [Ruegeria pomeroyi] WP_030003210.1 41 7 6 4 852 ABC transporter; periplasmic substrate-binding protein [Ruegeria pomeroyi DSS-3] AAV93381.1 (+1) 38 8 8 6 853 3-oxoacyl-[acyl-carrier-protein] synthase III [Ruegeria pomeroyi DSS-3] AAV94223.1 41 6 7 6 854 hypothetical protein SPO1048 [Ruegeria pomeroyi DSS-3] AAV94348.1 38 7 5 6 855 imidazoleglycerol phosphate synthase; cyclase subunit [Ruegeria pomeroyi DSS-3] AAV94455.1 27 9 7 8 856 HIT family protein [Ruegeria pomeroyi DSS-3] AAV94674.2 (+1) 15 5 6 7 857 selenium-binding protein; putative [Ruegeria pomeroyi DSS-3] AAV94930.1 52 6 6 9 858 phosphoribosylformylglycinamidine synthase; PurS protein [Ruegeria pomeroyi DSS-3] AAV95167.1 8 5 5 5 859 protein-export membrane protein SecF [Ruegeria pomeroyi DSS-3] AAV95582.1 35 3 4 5 860 hypothetical protein SPO2595 [Ruegeria pomeroyi DSS-3] AAV95843.2 43 6 4 8 861 hypothetical protein SPO3172 [Ruegeria pomeroyi DSS-3] AAV96407.1 43 6 7 10 862 branched-chain amino acid ABC transporter; periplasmic branched-chain amino acid-binding protein [Ruegeria pomeroyi DSS-3] AAV96926.1 42 8 10 9 863 RecName: Full=DNA mismatch repair protein MutS Q5LWH0.1 (+1) 95 10 10 11 864 ATP phosphoribosyltransferase regulatory subunit [Ruegeria pomeroyi] WP_011046419.1 40 9 8 11 865 cob(I)yrinic acid a;c-diamide adenosyltransferase [Ruegeria pomeroyi] WP_011046472.1 21 6 7 9 866 Zn-dependent hydrolase [Ruegeria pomeroyi] WP_011047514.1 45 10 8 8 867 MULTISPECIES: cytochrome c maturation protein CcmE [Ruegeria] WP_011047610.1 16 5 6 7 868 DUF2849 domain-containing protein [Ruegeria pomeroyi] WP_011048335.1 12 7 8 7 869 AAA family ATPase [Ruegeria pomeroyi] WP_011241986.1 110 11 8 11 870 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1;4-benzoquinol methylase UbiE [Ruegeria pomeroyi] WP_044027772.1 28 7 7 10 871 transcriptional regulator; GntR family [Ruegeria pomeroyi DSS-3] AAV94663.1 24 8 7 9 872 hypothetical protein SPO1633 [Ruegeria pomeroyi DSS-3] AAV94920.2 (+1) 53 10 10 10 873 hypothetical protein SPO2224 [Ruegeria pomeroyi DSS-3] AAV95490.1 22 8 9 7 874 organic solvent tolerance protein; putative [Ruegeria pomeroyi DSS-3] AAV95709.1 80 9 6 9 875 hypothetical protein SPO2721 [Ruegeria pomeroyi DSS-3] AAV95966.1 (+1) 22 6 10 10 876 peptidoglycan-associated lipoprotein [Ruegeria pomeroyi DSS-3] AAV96343.1 (+1) 19 4 5 4 877 hypothetical protein SPOA0342 (plasmid) [Ruegeria pomeroyi DSS-3] AAV97474.1 29 11 6 5 878 RecName: Full=50S ribosomal protein L23 Q5LLU8.1 11 3 3 3 879 30S ribosomal protein S20 [Ruegeria pomeroyi] WP_011045919.1 10 6 5 5 880 MULTISPECIES: preprotein translocase subunit SecY [Ruegeria] WP_011046265.1 49 7 6 5 881 transporter substrate-binding domain-containing protein [Ruegeria pomeroyi] WP_011046808.1 40 6 6 7 882 ATP-binding protein [Ruegeria pomeroyi] WP_011047624.1 65 10 8 6 883 pseudouridine-5'-phosphate glycosidase [Ruegeria pomeroyi] WP_011047787.1 31 7 9 9 884 RNA polymerase-binding protein DksA [Ruegeria pomeroyi] WP_011048218.1 18 7 7 6 885 hypothetical protein [Ruegeria pomeroyi] WP_011048354.1 36 8 8 8 886 acetylornithine deacetylase [Ruegeria pomeroyi] WP_011048512.1 42 9 7 7 887 YbaB/EbfC family nucleoid-associated protein [Ruegeria pomeroyi] WP_011049250.1 12 6 7 6 888 mechanosensitive ion channel family protein [Ruegeria pomeroyi DSS-3] AAV93873.1 90 7 6 8 889 tyrosinase domain protein [Ruegeria pomeroyi DSS-3] AAV94692.1 51 7 7 8 890 transcription antitermination factor NusB [Ruegeria pomeroyi DSS-3] AAV95043.1 18 5 5 4 891 oxidoreductase; molybdopterin-binding protein [Ruegeria pomeroyi DSS-3] AAV95647.1 (+1) 83 9 7 9 892 molybdenum cofactor biosynthesis protein A [Ruegeria pomeroyi DSS-3] AAV96040.1 38 9 7 6 893 oxidoreductase; zinc-binding dehydrogenase family [Ruegeria pomeroyi DSS-3] AAV96201.1 34 5 8 7 894 cob(I)yrinic acid a;c-diamide adenosyltransferase [Ruegeria pomeroyi] WP_011046024.1 22 7 7 7 895 diaminopimelate decarboxylase [Ruegeria pomeroyi] WP_011046095.1 45 10 7 7 896 DsbA family oxidoreductase [Ruegeria pomeroyi] WP_011047128.1 24 4 5 6 897 M20 family metallopeptidase [Ruegeria pomeroyi] WP_011048511.1 42 4 4 4 898 insulinase family protein [Ruegeria pomeroyi] WP_011048763.1 46 6 11 10 899 protein TolQ [Ruegeria pomeroyi] WP_011048802.1 25 6 6 5 900 hypothetical protein [Ruegeria pomeroyi] WP_011049005.1 51 10 7 8 901 ABC transporter ATP-binding protein [Ruegeria pomeroyi] WP_011049151.1 42 6 8 9 902 double-strand break repair protein AddB [Ruegeria pomeroyi] WP_011049543.1 107 6 8 10 903 hypothetical protein [Ruegeria pomeroyi] WP_011241790.1 10 4 4 4 904 Chain B; Acrylyl-CoA reductase AcuI gi|1248693337|pdb|5GXE|B (+1) 35 9 6 9 905 Chain A; PHOSPHONATE MONOESTER HYDROLASE gi|859066236|pdb|4UPK|A 60 11 7 4 906 ubiquinol--cytochrome c reductase; cytochrome B [Ruegeria pomeroyi DSS-3] AAV93592.1 50 3 3 3 907 UDP-glucose/GDP-mannose dehydrogenase family protein [Ruegeria pomeroyi DSS-3] AAV93872.1 (+1) 47 6 6 8 908 carboxynorspermidine decarboxylase [Ruegeria pomeroyi DSS-3] AAV93915.2 43 7 7 8 909 hypothetical protein SPO0727 [Ruegeria pomeroyi DSS-3] AAV94033.1 (+1) 26 5 7 7 910 putative protein TIGR01244 [Ruegeria pomeroyi DSS-3] AAV94331.1 15 3 4 6 911 TRAP dicarboxylate transporter; DctP subunit; putative [Ruegeria pomeroyi DSS-3] AAV94752.1 37 9 6 6 912 gid protein [Ruegeria pomeroyi DSS-3] AAV94971.1 49 8 6 6 913 cyclopropane-fatty-acyl-phospholipid synthase [Ruegeria pomeroyi DSS-3] AAV95195.1 47 7 6 9 914 hypothetical protein SPO2723 [Ruegeria pomeroyi DSS-3] AAV95968.1 (+1) 59 6 6 4 915 amidohydrolase family protein [Ruegeria pomeroyi DSS-3] AAV96051.1 41 7 6 6 916 ABC transporter; ATP binding/permease protein [Ruegeria pomeroyi DSS-3] AAV96243.1 69 6 6 8 917 Cys/Met metabolism PLP-dependent enzyme family protein [Ruegeria pomeroyi DSS-3] AAV96570.2 (+1) 39 7 5 8 918 S-formylglutathione hydrolase; putative [Ruegeria pomeroyi DSS-3] AAV97043.2 30 9 8 8 919 hypothetical protein SPO0346a [Ruegeria pomeroyi DSS-3] AHB86006.1 (+1) 18 5 5 6 920 DUF6173 family protein [Ruegeria pomeroyi] WP_011046061.1 17 6 7 7 921 DNA cytosine methyltransferase [Ruegeria pomeroyi] WP_011046796.1 41 9 8 8 922 hypothetical protein [Ruegeria pomeroyi] WP_011046900.1 21 7 6 6 923 BolA family transcriptional regulator [Ruegeria pomeroyi] WP_011047602.1 8 6 5 8 924 beta-ketoacyl-[acyl-carrier-protein] synthase family protein [Ruegeria pomeroyi] WP_011047663.1 42 7 8 8 925 DUF1330 domain-containing protein [Ruegeria pomeroyi] WP_011047759.1 10 5 3 3 926 cobalamin-binding protein [Ruegeria pomeroyi] WP_011047883.1 25 7 8 7 927 M48 family metalloprotease [Ruegeria pomeroyi] WP_011048295.1 49 9 8 6 928 hypothetical protein [Ruegeria pomeroyi] WP_011048577.1 17 6 6 5 929 peptide deformylase [Ruegeria pomeroyi] WP_011048909.1 20 8 7 6 930 16S rRNA (uracil(1498)-N(3))-methyltransferase [Ruegeria pomeroyi] WP_011049308.1 27 7 8 8 931 hypothetical protein [Ruegeria pomeroyi] WP_030003178.1 21 3 6 5 932 ferrochelatase [Ruegeria pomeroyi] WP_044027749.1 40 11 8 6 933 hypothetical protein [Ruegeria pomeroyi] WP_044028557.1 16 5 7 6 934 6-aminohexanoate-dimer hydrolase; putative [Ruegeria pomeroyi DSS-3] AAV94115.1 42 6 5 7 935 cyclase; putative [Ruegeria pomeroyi DSS-3] AAV94140.1 (+1) 29 7 7 7 936 hypothetical protein SPO0954 [Ruegeria pomeroyi DSS-3] AAV94259.1 18 6 6 7 937 GTP cyclohydrolase FolE2 [Ruegeria pomeroyi DSS-3] AAV94640.1 41 6 7 7 938 hypothetical protein SPO1996 [Ruegeria pomeroyi DSS-3] AAV95271.1 32 10 9 6 939 TPR domain protein [Ruegeria pomeroyi DSS-3] AAV95343.1 62 5 6 6 940 TRAP transporter; DctM subunit; putative [Ruegeria pomeroyi DSS-3] AAV95819.1 82 6 9 6 941 hypothetical protein SPO2690 [Ruegeria pomeroyi DSS-3] AAV95935.1 38 10 8 6 942 hydrolase; NUDIX family [Ruegeria pomeroyi DSS-3] AAV96000.1 26 6 4 5 943 lipoprotein; putative [Ruegeria pomeroyi DSS-3] AAV96225.1 35 6 7 5 944 cytochrome c552 [Ruegeria pomeroyi DSS-3] AAV96763.1 17 6 6 7 945 acetolactate synthase large subunit (plasmid) [Ruegeria pomeroyi DSS-3] AAV97549.1 60 7 8 10 946 bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase [Ruegeria pomeroyi] WP_011045840.1 28 6 6 4 947 DNA polymerase III subunit alpha [Ruegeria pomeroyi] WP_011046407.1 130 9 8 6 948 hypothetical protein [Ruegeria pomeroyi] WP_011046782.1 33 5 4 7 949 thiamine pyrophosphate-binding protein [Ruegeria pomeroyi] WP_011048585.1 57 6 8 7 950 rhodanese-like domain-containing protein [Ruegeria pomeroyi] WP_011048644.1 14 8 7 4 951 glutathione S-transferase [Ruegeria pomeroyi] WP_011048989.1 22 3 4 5 952 invasion associated locus B family protein [Ruegeria pomeroyi] WP_011049031.1 19 7 7 7 953 VacJ family lipoprotein [Ruegeria pomeroyi] WP_011049405.1 29 4 4 5 954 formate dehydrogenase accessory sulfurtransferase FdhD [Ruegeria pomeroyi] WP_044027802.1 33 7 4 6 955 cytochrome c family protein [Ruegeria pomeroyi DSS-3] AAV93458.1 14 6 5 6 956 CaiB/BaiF family protein [Ruegeria pomeroyi DSS-3] AAV93584.1 46 7 6 6 957 purine nucleoside phosphorylase [Ruegeria pomeroyi DSS-3] AAV93684.1 25 7 8 7 958 taurine ABC transporter; periplasmic taurine-binding protein [Ruegeria pomeroyi DSS-3] AAV93982.1 (+1) 35 6 6 7 959 CoA-binding domain protein [Ruegeria pomeroyi DSS-3] AAV94452.1 (+1) 18 7 7 6 960 CBS domain protein [Ruegeria pomeroyi DSS-3] AAV94918.1 47 6 8 8 961 3-dehydroquinate synthase [Ruegeria pomeroyi DSS-3] AAV94922.1 39 6 7 7 962 enoyl-CoA hydratase/isomerase family protein [Ruegeria pomeroyi DSS-3] AAV95161.1 28 4 6 7 963 hypothetical protein SPO1923 [Ruegeria pomeroyi DSS-3] AAV95200.1 26 5 7 7 964 phosphate ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV95227.1 31 9 7 8 965 MmgE/PrpD family protein [Ruegeria pomeroyi DSS-3] AAV95366.1 45 5 8 9 966 peptidase; M23/M37 family [Ruegeria pomeroyi DSS-3] AAV95496.1 (+1) 56 6 9 9 967 ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV95917.1 27 6 6 6 968 peptide deformylase [Ruegeria pomeroyi DSS-3] AAV96452.1 19 7 6 6 969 nitrogen regulatory protein P-II [Ruegeria pomeroyi DSS-3] AAV97116.1 12 6 6 6 970 hypothetical protein SPOA0138 (plasmid) [Ruegeria pomeroyi DSS-3] AAV97274.1 17 5 5 5 971 pyridoxal-phosphate dependent enzyme (plasmid) [Ruegeria pomeroyi DSS-3] AAV97566.1 34 7 7 8 972 ABC transporter [Ruegeria pomeroyi DSS-3] AHB86010.1 65 8 6 8 973 RecName: Full=Sec-independent protein translocase protein TatB Q5LQ14.1 16 7 7 6 974 RecName: Full=LexA repressor Q5LRH4.1 25 5 5 5 975 FkbM family methyltransferase [Ruegeria pomeroyi] WP_011046516.1 25 6 7 7 976 accessory factor UbiK family protein [Ruegeria pomeroyi] WP_011046658.1 9 5 5 5 977 signal recognition particle-docking protein FtsY [Ruegeria pomeroyi] WP_011047077.1 41 6 8 7 978 SDR family NAD(P)-dependent oxidoreductase [Ruegeria pomeroyi] WP_011048381.1 22 10 8 5 979 Crp/Fnr family transcriptional regulator [Ruegeria pomeroyi] WP_011049211.1 27 7 9 9 980 DUF1244 domain-containing protein [Ruegeria pomeroyi] WP_011049282.1 12 7 6 6 981 SCO family protein [Ruegeria pomeroyi] WP_011049537.1 23 4 7 4 982 trimethylamine-oxide aldolase Tdm [Ruegeria pomeroyi] WP_030003205.1 86 8 7 6 983 carboxylating nicotinate-nucleotide diphosphorylase [Ruegeria pomeroyi] WP_030003255.1 30 5 5 7 984 agmatinase [Ruegeria pomeroyi DSS-3] AAV95721.1 (+1) 35 3 4 3 985 hypothetical protein SPO1033 [Ruegeria pomeroyi DSS-3] AAV94337.1 10 5 4 5 986 heat-inducible transcription repressor HrcA [Ruegeria pomeroyi DSS-3] AAV93340.1 39 9 7 6 987 PTS IIA-like nitrogen-regulatory protein PtsN [Ruegeria pomeroyi DSS-3] AAV93408.1 16 8 7 5 988 pantoate--beta-alanine ligase [Ruegeria pomeroyi DSS-3] AAV93434.1 30 7 5 8 989 hypothetical protein SPO0867 [Ruegeria pomeroyi DSS-3] AAV94172.1 139 7 11 8 990 hypothetical protein SPO0976 [Ruegeria pomeroyi DSS-3] AAV94280.1 17 5 5 6 991 DNA helicase II; putative [Ruegeria pomeroyi DSS-3] AAV94470.2 89 6 7 7 992 hypothetical protein SPO1770 [Ruegeria pomeroyi DSS-3] AAV95049.1 (+1) 20 5 6 5 993 adenylyltransferase [Ruegeria pomeroyi DSS-3] AAV95733.1 (+1) 52 5 6 9 994 methionyl-tRNA formyltransferase [Ruegeria pomeroyi DSS-3] AAV96451.1 32 8 7 7 995 pyridoxal-phosphate dependent enzyme family protein [Ruegeria pomeroyi DSS-3] AAV96568.1 31 7 8 7 996 mechanosensitive ion channel family protein [Ruegeria pomeroyi DSS-3] AAV96722.1 29 4 6 6 997 uroporphyrinogen decarboxylase [Ruegeria pomeroyi DSS-3] AAV96871.1 37 7 6 6 998 7-alpha-hydroxysteroid dehydrogenase; putative [Ruegeria pomeroyi DSS-3] AAV96877.1 28 6 7 8 999 DUF2326 domain-containing protein [Ruegeria pomeroyi] WP_011046978.1 69 6 5 8 1000 hypothetical protein [Ruegeria pomeroyi] WP_011047485.1 15 4 5 6 1001 serine O-acetyltransferase [Ruegeria pomeroyi] WP_011047969.1 30 7 5 6 1002 aerobic carbon-monoxide dehydrogenase large subunit [Ruegeria pomeroyi] WP_011048110.1 88 7 4 5 1003 hypothetical protein [Ruegeria pomeroyi] WP_011048823.1 17 7 6 7 1004 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN [Ruegeria pomeroyi] WP_011049029.1 44 9 6 8 1005 dehydrogenase/transketolase family protein [Ruegeria pomeroyi DSS-3] AAV93900.1 (+1) 80 7 7 4 1006 hippurate hydrolase [Ruegeria pomeroyi DSS-3] AAV94510.1 42 8 6 8 1007 aminotransferase; DegT/DnrJ/EryC1/StrS family [Ruegeria pomeroyi DSS-3] AAV94587.1 (+1) 47 7 8 8 1008 nitrile hydratase subunit alpha [Ruegeria pomeroyi DSS-3] AAV94603.1 22 6 6 6 1009 enoyl-CoA hydratase/isomerase family protein [Ruegeria pomeroyi DSS-3] AAV94972.1 28 5 6 5 1010 bacterial transferase family protein [Ruegeria pomeroyi DSS-3] AAV95222.1 19 5 5 6 1011 hypothetical protein SPO2572 [Ruegeria pomeroyi DSS-3] AAV95820.1 27 6 5 6 1012 thioesterase family protein [Ruegeria pomeroyi DSS-3] AAV96151.1 19 7 7 6 1013 hypothetical protein SPO2985 [Ruegeria pomeroyi DSS-3] AAV96223.1 33 6 6 6 1014 branched-chain amino acid aminotransferase (plasmid) [Ruegeria pomeroyi DSS-3] AAV97425.1 35 5 6 4 1015 CoA ester lyase [Ruegeria pomeroyi] WP_011046113.1 30 5 8 6 1016 acyl-CoA carboxylase subunit beta [Ruegeria pomeroyi] WP_011046841.1 56 7 8 7 1017 ABC transporter ATP-binding protein [Ruegeria pomeroyi] WP_011047668.1 30 9 8 8 1018 phosphate signaling complex protein PhoU [Ruegeria pomeroyi] WP_011047683.1 26 6 7 8 1019 enoyl-CoA hydratase/isomerase family protein [Ruegeria pomeroyi] WP_011049122.1 21 5 8 5 1020 cytochrome c oxidase accessory protein CcoG [Ruegeria pomeroyi] WP_011049202.1 54 5 6 6 1021 double-strand break repair helicase AddA [Ruegeria pomeroyi] WP_011049544.1 122 6 7 6 1022 hypothetical protein SPO0412 [Ruegeria pomeroyi DSS-3] AAV93730.1 (+1) 18 4 6 5 1023 nitroreductase family protein [Ruegeria pomeroyi DSS-3] AAV94240.1 21 5 6 7 1024 alkylhydroperoxidase AhpD family core domain protein [Ruegeria pomeroyi DSS-3] AAV94547.1 (+1) 24 7 4 5 1025 2-octaprenyl-6-methoxyphenol hydroxylase; putative [Ruegeria pomeroyi DSS-3] AAV94659.1 43 6 7 6 1026 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [Ruegeria pomeroyi DSS-3] AAV94710.1 34 8 5 8 1027 iron-sulfur cluster-binding protein [Ruegeria pomeroyi DSS-3] AAV95079.1 68 9 5 7 1028 hypothetical protein SPO2491 [Ruegeria pomeroyi DSS-3] AAV95743.1 (+1) 22 6 7 6 1029 exodeoxyribonuclease III [Ruegeria pomeroyi DSS-3] AAV95759.1 30 6 7 6 1030 protease; S2 family [Ruegeria pomeroyi DSS-3] AAV95890.1 (+1) 35 7 6 6 1031 isovaleryl-CoA dehydrogenase [Ruegeria pomeroyi DSS-3] AAV96034.1 42 6 6 7 1032 cytosine deaminase; putative [Ruegeria pomeroyi DSS-3] AAV96047.1 46 6 5 5 1033 2-hydroxychromene-2-carboxylate isomerase [Ruegeria pomeroyi DSS-3] AAV96393.1 22 6 6 8 1034 ferric iron ABC transporter; periplasmic ferric iron-binding protein [Ruegeria pomeroyi DSS-3] AAV96514.1 (+1) 38 7 4 6 1035 hypothetical protein SPO3611 [Ruegeria pomeroyi DSS-3] AAV96835.1 21 5 5 5 1036 ATP-dependent RNA helicase; DEAD/DEAH box family [Ruegeria pomeroyi DSS-3] AAV97047.2 73 6 8 7 1037 transcriptional regulator; GntR family (plasmid) [Ruegeria pomeroyi DSS-3] AAV97395.1 26 6 6 8 1038 mandelate racemase/muconate lactonizing enzyme family protein (plasmid) [Ruegeria pomeroyi DSS-3] AAV97559.1 44 5 5 6 1039 RecName: Full=Triosephosphate isomerase; Short=TIM; Short=TPI; AltName: Full=Triose-phosphate isomerase Q5LQ75.1 25 6 6 6 1040 RecName: Full=Integration host factor subunit alpha; Short=IHF-alpha Q5LQJ4.1 11 4 3 3 1041 RecName: Full=Transcriptional regulator MraZ Q5LU80.1 19 3 4 4 1042 glutathione S-transferase [Ruegeria pomeroyi] WP_011046032.1 22 6 6 5 1043 amino acid ABC transporter permease [Ruegeria pomeroyi] WP_011046280.1 48 6 4 4 1044 MOSC domain-containing protein [Ruegeria pomeroyi] WP_011046290.1 28 7 6 7 1045 FkbM family methyltransferase [Ruegeria pomeroyi] WP_011047461.1 28 5 7 5 1046 CinA family protein [Ruegeria pomeroyi] WP_011047818.1 16 6 6 7 1047 GNAT family N-acetyltransferase [Ruegeria pomeroyi] WP_011047993.1 20 6 7 7 1048 ATP-binding cassette domain-containing protein [Ruegeria pomeroyi] WP_011048196.1 66 6 5 6 1049 glycosyltransferase family 2 protein [Ruegeria pomeroyi] WP_011048351.1 88 5 5 7 1050 MerR family DNA-binding transcriptional regulator [Ruegeria pomeroyi] WP_011048612.1 15 4 4 4 1051 SPOR domain-containing protein [Ruegeria pomeroyi] WP_044028459.1 38 8 8 5 1052 hypothetical protein SPO1070 [Ruegeria pomeroyi DSS-3] AAV94370.1 60 3 4 7 1053 BolA protein; truncation [Ruegeria pomeroyi DSS-3] AAV96090.1 9 5 3 5 1054 hypothetical protein SPO0230 [Ruegeria pomeroyi DSS-3] AAV93555.1 25 7 6 6 1055 Ser/Thr protein phosphatase family protein [Ruegeria pomeroyi DSS-3] AAV93607.1 21 8 4 5 1056 transcriptional regulator; LysR family [Ruegeria pomeroyi DSS-3] AAV94175.1 34 7 8 7 1057 putative protein TIGR00726 [Ruegeria pomeroyi DSS-3] AAV94211.1 27 7 4 7 1058 aminomethyl transferase family protein [Ruegeria pomeroyi DSS-3] AAV94539.1 26 6 4 7 1059 TRAP dicarboxylate transporter; DctP subunit [Ruegeria pomeroyi DSS-3] AAV94741.1 37 7 6 8 1060 iron ABC transporter; ATP-binding protein; putative [Ruegeria pomeroyi DSS-3] AAV95934.1 (+1) 40 5 6 6 1061 kynureninase [Ruegeria pomeroyi DSS-3] AAV96065.1 (+1) 43 4 7 6 1062 hypothetical protein SPO2924 [Ruegeria pomeroyi DSS-3] AAV96165.1 (+1) 41 5 7 7 1063 transcriptional regulator; LysR family [Ruegeria pomeroyi DSS-3] AAV96475.1 32 5 5 7 1064 polyamine ABC transporter; permease protein [Ruegeria pomeroyi DSS-3] AAV96700.1 47 8 5 5 1065 hypothetical protein SPO3492 [Ruegeria pomeroyi DSS-3] AAV96718.1 18 5 5 4 1066 hypothetical protein SPO3511 [Ruegeria pomeroyi DSS-3] AAV96736.1 34 4 6 4 1067 glutathione S-transferase family protein [Ruegeria pomeroyi DSS-3] AAV96985.1 26 4 6 3 1068 hypothetical protein SPO1234 [Ruegeria pomeroyi DSS-3] AAV97133.1 (+1) 36 7 9 7 1069 unnamed protein product [Ruegeria pomeroyi DSS-3] CAY09516.1 35 5 7 5 1070 unnamed protein product [Ruegeria pomeroyi DSS-3] CBC35247.1 33 7 4 7 1071 RecName: Full=UDP-3-O-acylglucosamine N-acyltransferase Q5LS40.1 37 4 7 5 1072 sulfotransferase family 2 domain-containing protein [Ruegeria pomeroyi] WP_011045806.1 53 7 9 6 1073 flavin-dependent oxidoreductase [Ruegeria pomeroyi] WP_011045878.1 45 5 4 5 1074 MULTISPECIES: DUF465 domain-containing protein [Ruegeria] WP_011046083.1 6 5 5 4 1075 penicillin-binding protein 2 [Ruegeria pomeroyi] WP_011046178.1 71 6 6 5 1076 type I polyketide synthase [Ruegeria pomeroyi] WP_011046598.1 231 4 6 8 1077 GatB/YqeY domain-containing protein [Ruegeria pomeroyi] WP_011047116.1 17 4 4 3 1078 carbon monoxide dehydrogenase subunit G [Ruegeria pomeroyi] WP_011047254.1 18 7 6 8 1079 TRAP transporter permease [Ruegeria pomeroyi] WP_011047907.1 92 4 6 5 1080 crotonase/enoyl-CoA hydratase family protein [Ruegeria pomeroyi] WP_011048486.1 27 5 8 9 1081 DNA alkylation repair protein [Ruegeria pomeroyi] WP_011048498.1 26 3 4 5 1082 ABC transporter ATP-binding protein [Ruegeria pomeroyi] WP_011049214.1 58 8 5 6 1083 NAD(P)H-dependent oxidoreductase [Ruegeria pomeroyi] WP_011049253.1 19 5 7 6 1084 DEAD/DEAH box helicase [Ruegeria pomeroyi] WP_030003227.1 45 4 5 8 1085 YggS family pyridoxal phosphate-dependent enzyme [Ruegeria pomeroyi] WP_044029369.1 24 5 6 6 1086 glycine cleavage system H protein (plasmid) [Ruegeria pomeroyi DSS-3] AAV97198.2 13 4 4 3 1087 oxidoreductase; short chain dehydrogenase/reductase family [Ruegeria pomeroyi DSS-3] AAV93456.1 (+1) 27 5 6 6 1088 CAIB/BAIF family protein [Ruegeria pomeroyi DSS-3] AAV94125.1 40 5 7 6 1089 glycyl-tRNA synthetase; alpha subunit [Ruegeria pomeroyi DSS-3] AAV94643.1 35 4 5 5 1090 hydrolase; alpha/beta fold family [Ruegeria pomeroyi DSS-3] AAV94786.1 33 4 4 4 1091 guanylate kinase [Ruegeria pomeroyi DSS-3] AAV95221.1 24 5 5 5 1092 glutathione S-transferase family protein [Ruegeria pomeroyi DSS-3] AAV95330.1 32 3 4 5 1093 pyridoxine/pyridoxamine 5'-phosphate oxidase [Ruegeria pomeroyi DSS-3] AAV95409.2 23 7 6 6 1094 membrane lipoprotein [Ruegeria pomeroyi DSS-3] AAV95741.1 17 4 4 5 1095 segregation and condensation protein B [Ruegeria pomeroyi DSS-3] AAV95750.1 24 7 5 5 1096 DNA-binding protein; putative [Ruegeria pomeroyi DSS-3] AAV95829.1 (+1) 31 5 4 6 1097 hypothetical protein SPO2931 [Ruegeria pomeroyi DSS-3] AAV96172.1 44 6 5 4 1098 5;10-methylenetetrahydrofolate reductase [Ruegeria pomeroyi DSS-3] AAV96252.1 (+1) 34 7 5 7 1099 oxidoreductase; short-chain dehydrogenase/reductase family [Ruegeria pomeroyi DSS-3] AAV96287.1 22 6 5 7 1100 2;3-bisphosphoglycerate-independent phosphoglycerate mutase [Ruegeria pomeroyi DSS-3] AAV97024.1 54 5 6 5 1101 RNA-dependent DNA polymerase; putative [Ruegeria pomeroyi DSS-3] AAV97130.1 36 6 6 7 1102 hypothetical protein SPO2341a [Ruegeria pomeroyi DSS-3] AHB86025.1 14 3 5 5 1103 RNA-binding protein [Ruegeria pomeroyi] WP_011045835.1 22 6 4 4 1104 choline-sulfatase [Ruegeria pomeroyi] WP_011046830.1 57 5 6 5 1105 DegQ family serine endoprotease [Ruegeria pomeroyi] WP_011047362.1 48 5 6 5 1106 hypothetical protein [Ruegeria pomeroyi] WP_011047762.1 23 5 4 5 1107 cysteine--tRNA ligase [Ruegeria pomeroyi] WP_011047855.1 52 4 7 8 1108 YceI family protein [Ruegeria pomeroyi] WP_011047998.1 20 4 4 4 1109 sarcosine oxidase subunit gamma [Ruegeria pomeroyi] WP_011048061.1 20 6 5 5 1110 glutamine-synthetase adenylyltransferase [Ruegeria pomeroyi] WP_011048230.1 101 6 7 8 1111 carboxymuconolactone decarboxylase family protein [Ruegeria pomeroyi] WP_011048467.1 15 5 5 7 1112 DUF427 domain-containing protein [Ruegeria pomeroyi] WP_011048558.1 13 3 7 4 1113 DUF484 family protein [Ruegeria pomeroyi] WP_011048819.1 26 7 7 6 1114 quinolinate synthase NadA [Ruegeria pomeroyi] WP_011048933.1 38 6 5 6 1115 prolyl aminopeptidase [Ruegeria pomeroyi] WP_044027748.1 37 7 4 5 1116 ATP-dependent DNA helicase RecQ [Ruegeria pomeroyi DSS-3] AAV93438.1 75 7 5 6 1117 metallo-beta-lactamase family protein [Ruegeria pomeroyi DSS-3] AAV94334.1 (+1) 34 6 4 3 1118 serine/threonine protein phosphatase; putative [Ruegeria pomeroyi DSS-3] AAV94364.1 35 4 5 6 1119 hypothetical protein SPO1331 [Ruegeria pomeroyi DSS-3] AAV94620.1 47 5 4 4 1120 hypothetical protein SPO1769 [Ruegeria pomeroyi DSS-3] AAV95048.1 41 5 4 5 1121 NADH dehydrogenase I; N subunit [Ruegeria pomeroyi DSS-3] AAV96004.1 51 4 3 3 1122 hypothetical protein SPO2951 [Ruegeria pomeroyi DSS-3] AAV96192.1 (+1) 28 6 4 6 1123 molybdenum cofactor biosynthesis domain protein [Ruegeria pomeroyi DSS-3] AAV96980.1 25 4 4 4 1124 hypothetical protein SPO3864 [Ruegeria pomeroyi DSS-3] AAV97078.1 46 7 4 4 1125 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA (plasmid) [Ruegeria pomeroyi DSS-3] AAV97575.1 19 4 5 3 1126 unnamed protein product [Ruegeria pomeroyi DSS-3] CBG04033.1 (+1) 36 3 4 5 1127 tellurite resistance TerB family protein [Ruegeria pomeroyi] WP_011046213.1 16 6 6 5 1128 cyclase family protein [Ruegeria pomeroyi] WP_011046510.1 28 5 4 4 1129 hypothetical protein [Ruegeria pomeroyi] WP_011046793.1 27 4 7 6 1130 glutathione S-transferase [Ruegeria pomeroyi] WP_011046998.1 22 5 4 4 1131 ABC-F family ATP-binding cassette domain-containing protein [Ruegeria pomeroyi] WP_011048155.1 68 9 4 5 1132 DNA polymerase III subunit delta' [Ruegeria pomeroyi] WP_011048440.1 40 4 8 8 1133 MULTISPECIES: hypothetical protein [Ruegeria] WP_011049311.1 12 6 5 5 1134 carbon-nitrogen hydrolase family protein [Ruegeria pomeroyi] WP_011241860.1 32 7 7 5 1135 glutathione binding-like protein [Ruegeria pomeroyi] WP_030003242.1 24 6 6 6 1136 phosphoserine phosphatase SerB [Ruegeria pomeroyi] WP_044028732.1 31 8 5 5 1137 pyrroline-5-carboxylate reductase [Ruegeria pomeroyi] WP_044029023.1 28 6 8 7 1138 guanine deaminase [Ruegeria pomeroyi] WP_011048655.1 47 3 4 3 1139 6;7-dimethyl-8-ribityllumazine synthase [Ruegeria pomeroyi] WP_011047496.1 19 5 3 6 1140 hypothetical protein SPO2180 [Ruegeria pomeroyi DSS-3] AAV95447.1 11 3 5 4 1141 Bax inhibitor-1/YccA family protein [Ruegeria pomeroyi] WP_044028603.1 28 3 3 3 1142 ribosomal protein L35 [Ruegeria pomeroyi DSS-3] AAV97119.1 7 2 2 2 1143 methylmalonyl-CoA epimerase [Ruegeria pomeroyi DSS-3] AAV94237.1 (+1) 15 5 3 4 1144 hypothetical protein SPO1263 [Ruegeria pomeroyi DSS-3] AAV94555.1 16 4 4 4 1145 DNA-binding protein; putative [Ruegeria pomeroyi DSS-3] AAV94557.1 14 4 4 5 1146 hypothetical protein SPO2610 [Ruegeria pomeroyi DSS-3] AAV95856.1 27 5 6 4 1147 queuine tRNA-ribosyltransferase [Ruegeria pomeroyi DSS-3] AAV95861.1 42 6 6 4 1148 glucans biosynthesis glucosyltransferase H; putative [Ruegeria pomeroyi DSS-3] AAV96131.1 (+1) 69 5 6 5 1149 hypothetical protein SPO3350 [Ruegeria pomeroyi DSS-3] AAV96577.1 11 4 4 4 1150 ubiquinone biosynthesis hydroxylase; UbiH/UbiF/VisC/COQ6 family [Ruegeria pomeroyi DSS-3] AAV96645.1 45 4 6 6 1151 HAD-superfamily hydrolase; subfamily IA; variant 1 [Ruegeria pomeroyi DSS-3] AAV96983.1 23 6 6 5 1152 hypothetical protein SPOA0341 (plasmid) [Ruegeria pomeroyi DSS-3] AAV97473.1 (+1) 28 5 7 3 1153 RecName: Full=Anthranilate phosphoribosyltransferase Q5LRH8.1 35 6 6 6 1154 AAA family ATPase [Ruegeria pomeroyi] WP_011045775.1 29 6 5 5 1155 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB [Ruegeria pomeroyi] WP_011046896.1 27 5 4 4 1156 dihydroneopterin aldolase [Ruegeria pomeroyi] WP_011047100.1 34 7 5 6 1157 acyl-CoA dehydrogenase family protein [Ruegeria pomeroyi] WP_011047933.1 41 5 6 4 1158 MerR family transcriptional regulator [Ruegeria pomeroyi] WP_011048204.1 26 5 5 4 1159 glycosyltransferase family 2 protein [Ruegeria pomeroyi] WP_011048353.1 41 7 5 5 1160 protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ruegeria pomeroyi] WP_011048389.1 23 4 3 6 1161 NAD kinase [Ruegeria pomeroyi] WP_011048639.1 27 5 5 5 1162 magnesium transporter [Ruegeria pomeroyi] WP_011048654.1 50 6 5 5 1163 DNA mismatch repair endonuclease MutL [Ruegeria pomeroyi] WP_011049045.1 67 7 5 4 1164 RNA pyrophosphohydrolase [Ruegeria pomeroyi] WP_011049265.1 19 6 6 5 1165 haloacid dehalogenase type II [Ruegeria pomeroyi] WP_011242214.1 25 6 6 7 1166 hypothetical protein [Ruegeria pomeroyi] WP_030003183.1 12 4 4 7 1167 hypothetical protein [Ruegeria pomeroyi] WP_030003235.1 25 7 4 5 1168 alanine:cation symporter family protein [Ruegeria pomeroyi] WP_044028377.1 54 4 5 4 1169 hypothetical protein SPO3000 [Ruegeria pomeroyi DSS-3] AAV96238.1 (+1) 35 4 4 4 1170 hypothetical protein SPO0374 [Ruegeria pomeroyi DSS-3] AAV93692.1 29 3 3 5 1171 LPS assembly lipoprotein LptE [Ruegeria pomeroyi] WP_011049116.1 17 4 3 3 1172 hypothetical protein SPO3166 [Ruegeria pomeroyi DSS-3] AAV96401.1 (+1) 35 2 2 3 1173 hypothetical protein SPO0360a [Ruegeria pomeroyi DSS-3] AHB86007.1 9 3 2 2 1174 1-deoxy-D-xylulose-5-phosphate synthase [Ruegeria pomeroyi DSS-3] AAV93567.1 68 7 4 6 1175 histone deacetylase family protein [Ruegeria pomeroyi DSS-3] AAV93570.1 33 7 6 4 1176 ATPase; AAA family [Ruegeria pomeroyi DSS-3] AAV93832.1 48 5 7 6 1177 GTP-binding protein Era [Ruegeria pomeroyi DSS-3] AAV93998.1 34 6 5 6 1178 cell division protein FtsA [Ruegeria pomeroyi DSS-3] AAV94499.1 48 4 7 6 1179 His/Glu/Gln/Arg/opine family ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV94596.1 28 5 5 4 1180 undecaprenyl diphosphate synthase [Ruegeria pomeroyi DSS-3] AAV94950.1 28 4 4 6 1181 GTP-binding protein HflX [Ruegeria pomeroyi DSS-3] AAV95351.1 47 4 5 3 1182 AhpC/TSA family protein [Ruegeria pomeroyi DSS-3] AAV95494.1 17 6 4 5 1183 lipid A biosynthesis lauroyl acyltransferase; putative [Ruegeria pomeroyi DSS-3] AAV95572.1 34 5 3 4 1184 transcriptional regulator; GntR family [Ruegeria pomeroyi DSS-3] AAV95688.1 (+1) 27 6 6 4 1185 beta-N-acetylhexosaminidase; putative [Ruegeria pomeroyi DSS-3] AAV95752.1 36 7 6 5 1186 transcriptional regulator; GntR family [Ruegeria pomeroyi DSS-3] AAV95793.1 27 5 6 4 1187 5-aminolevulinic acid synthase [Ruegeria pomeroyi DSS-3] AAV95844.1 44 5 5 5 1188 hypothetical protein SPO2769 [Ruegeria pomeroyi DSS-3] AAV96010.1 33 4 4 3 1189 phosphoglycolate phosphatase [Ruegeria pomeroyi DSS-3] AAV96037.1 23 5 5 5 1190 adenine phosphoribosyltransferase [Ruegeria pomeroyi DSS-3] AAV96301.1 19 6 4 6 1191 hypothetical protein SPO3137 [Ruegeria pomeroyi DSS-3] AAV96372.1 (+1) 21 4 4 5 1192 hypothetical protein SPO3503 [Ruegeria pomeroyi DSS-3] AAV96728.1 31 6 6 6 1193 cold shock protein CspA [Ruegeria pomeroyi DSS-3] AAV96848.1 7 3 3 3 1194 acetyltransferase; GNAT family [Ruegeria pomeroyi DSS-3] AAV96851.1 (+1) 31 5 5 5 1195 Signal transduction [Ruegeria pomeroyi DSS-3] AHB86020.1 19 3 5 3 1196 RecName: Full=Phosphatidylserine decarboxylase proenzyme; Contains: RecName: Full=Phosphatidylserine decarboxylase alpha chain; Contains: RecName: Full=Phosphatidylserine decarboxylase beta chain Q5LKT7.1 24 4 5 6 1197 RecName: Full=Ribosome maturation factor RimP Q5LWL1.1 23 5 6 5 1198 membrane protein [Ruegeria pomeroyi] WP_011046312.1 44 6 5 5 1199 agmatinase [Ruegeria pomeroyi] WP_011046429.1 35 4 3 6 1200 Ppx/GppA family phosphatase [Ruegeria pomeroyi] WP_011046864.1 58 7 5 4 1201 cytochrome c oxidase subunit I [Ruegeria pomeroyi] WP_011047121.1 62 6 4 4 1202 phosphotransferase [Ruegeria pomeroyi] WP_011047693.1 38 4 6 4 1203 alpha/beta hydrolase [Ruegeria pomeroyi] WP_011048847.1 29 4 6 7 1204 cytochrome-c oxidase; cbb3-type subunit III [Ruegeria pomeroyi] WP_011049203.1 31 5 5 5 1205 endonuclease III [Ruegeria pomeroyi] WP_011049261.1 24 4 5 4 1206 phosphotransferase [Ruegeria pomeroyi] WP_044028873.1 37 7 6 5 1207 HpcH/HpaI aldolase family protein [Ruegeria pomeroyi DSS-3] AAV96907.1 27 3 4 7 1208 6-phosphogluconolactonase [Ruegeria pomeroyi DSS-3] AAV95318.1 24 6 4 5 1209 NADH-quinone oxidoreductase subunit NuoH [Ruegeria pomeroyi] WP_011048471.1 38 0 2 4 1210 DNA-binding response regulator; LuxR family [Ruegeria pomeroyi DSS-3] AAV93487.1 22 4 5 4 1211 cell division ATP-binding protein FtsE [Ruegeria pomeroyi DSS-3] AAV93655.1 (+1) 27 3 4 4 1212 D-isomer specific 2-hydroxyacid dehydrogenase family protein [Ruegeria pomeroyi DSS-3] AAV93733.2 34 4 4 3 1213 hypothetical protein SPO0562 [Ruegeria pomeroyi DSS-3] AAV93877.1 19 4 4 3 1214 D-isomer specific 2-hydroxyacid dehydrogenase family protein [Ruegeria pomeroyi DSS-3] AAV94218.1 34 6 5 5 1215 hypothetical protein SPO1037 [Ruegeria pomeroyi DSS-3] AAV94340.1 51 3 8 5 1216 paraquat-inducible protein; putative [Ruegeria pomeroyi DSS-3] AAV94541.1 85 5 6 6 1217 ribosomal large subunit pseudouridine synthase D [Ruegeria pomeroyi DSS-3] AAV94695.1 36 3 5 6 1218 sarcosine oxidase; gamma subunit family [Ruegeria pomeroyi DSS-3] AAV95027.1 (+1) 19 5 4 5 1219 riboflavin biosynthesis protein RibD [Ruegeria pomeroyi DSS-3] AAV95034.1 (+1) 38 5 6 7 1220 oxidoreductase; molybdopterin-binding protein [Ruegeria pomeroyi DSS-3] AAV95124.1 76 3 4 6 1221 transcriptional regulator; AraC family [Ruegeria pomeroyi DSS-3] AAV95217.1 (+1) 36 7 5 4 1222 Trk system potassium uptake protein TrkA [Ruegeria pomeroyi DSS-3] AAV95354.1 50 4 3 6 1223 deoxyguanosinetriphosphate triphosphohydrolase; putative [Ruegeria pomeroyi DSS-3] AAV95755.1 43 5 6 4 1224 acid phosphatase SurE [Ruegeria pomeroyi DSS-3] AAV95933.1 28 3 5 6 1225 hypothetical protein SPO2712 [Ruegeria pomeroyi DSS-3] AAV95957.1 22 5 5 5 1226 methyltransferase-like protein [Ruegeria pomeroyi DSS-3] AAV96495.1 (+1) 30 5 5 5 1227 hypothetical protein SPO3434 [Ruegeria pomeroyi DSS-3] AAV96660.1 37 5 5 7 1228 transcriptional regulator; Crp/Fnr family (plasmid) [Ruegeria pomeroyi DSS-3] AAV97340.1 (+1) 25 8 5 5 1229 fatty oxidation complex; alpha subunit (plasmid) [Ruegeria pomeroyi DSS-3] AAV97555.1 77 4 5 6 1230 molybdenum cofactor biosynthesis protein B [Ruegeria pomeroyi] WP_011046052.1 20 6 5 5 1231 L-threonylcarbamoyladenylate synthase [Ruegeria pomeroyi] WP_011046058.1 33 6 6 6 1232 HAMP domain-containing histidine kinase [Ruegeria pomeroyi] WP_011046299.1 51 5 5 6 1233 acyl-CoA dehydrogenase family protein [Ruegeria pomeroyi] WP_011046523.1 44 5 5 5 1234 Rieske 2Fe-2S domain-containing protein [Ruegeria pomeroyi] WP_011047188.1 50 4 4 5 1235 dimethylsulfoniopropionate demethylase [Ruegeria pomeroyi] WP_011047644.1 40 4 4 4 1236 phosphate regulon transcriptional regulator PhoB [Ruegeria pomeroyi] WP_011047684.1 26 5 4 4 1237 HlyD family efflux transporter periplasmic adaptor subunit [Ruegeria pomeroyi] WP_011048417.1 67 4 6 7 1238 hypothetical protein [Ruegeria pomeroyi] WP_011049097.1 22 4 6 4 1239 serine hydrolase [Ruegeria pomeroyi] WP_011049315.1 42 7 4 4 1240 type I secretion target repeat-containing protein [Ruegeria pomeroyi] WP_011049353.1 225 4 6 5 1241 2;3-epoxybenzoyl-CoA dihydrolase [Ruegeria pomeroyi] WP_011049378.1 61 6 7 6 1242 MULTISPECIES: preQ(1) synthase [Ruegeria] WP_011049432.1 17 4 4 3 1243 hypothetical protein SPO0943 [Ruegeria pomeroyi DSS-3] AAV94248.1 9 3 3 3 1244 endoribonuclease L-PSP family protein [Ruegeria pomeroyi DSS-3] AAV94309.1 18 4 2 2 1245 methylcrotonyl-CoA carboxylase; beta subunit [Ruegeria pomeroyi DSS-3] AAV96031.1 57 6 3 2 1246 nitrile hydratase subunit beta [Ruegeria pomeroyi] WP_011047054.1 24 2 4 4 1247 ATP-binding cassette domain-containing protein [Ruegeria pomeroyi] WP_011046195.1 24 6 6 3 1248 thymidine phosphorylase [Ruegeria pomeroyi] WP_011048629.1 45 3 8 7 1249 hypothetical protein SPO0644 [Ruegeria pomeroyi DSS-3] AAV93952.2 15 2 0 0 1250 ErfK/YbiS/YcfS/YnhG family protein [Ruegeria pomeroyi DSS-3] AAV93362.2 19 5 4 3 1251 uracil-DNA glycosylase [Ruegeria pomeroyi DSS-3] AAV93606.1 29 4 4 5 1252 transcriptional regulator; TetR family [Ruegeria pomeroyi DSS-3] AAV94048.1 22 3 5 4 1253 glutamine synthetase family protein [Ruegeria pomeroyi DSS-3] AAV94070.1 47 4 6 6 1254 efflux transporter; RND family; MFP subunit [Ruegeria pomeroyi DSS-3] AAV94225.1 35 5 5 5 1255 lipoprotein releasing system transmembrane protein LolE [Ruegeria pomeroyi DSS-3] AAV94423.1 48 6 5 4 1256 capsular polysaccharide export protein KpsC [Ruegeria pomeroyi DSS-3] AAV95035.1 73 3 5 4 1257 DNA-binding protein; excisionase family [Ruegeria pomeroyi DSS-3] AAV95071.1 31 5 6 5 1258 hypothetical protein SPO1901 [Ruegeria pomeroyi DSS-3] AAV95179.1 11 5 5 4 1259 lipoprotein; putative [Ruegeria pomeroyi DSS-3] AAV96022.1 11 4 3 5 1260 CobG [Ruegeria pomeroyi DSS-3] AAV96105.1 40 3 6 6 1261 hydroxydechloroatrazine ethylaminohydrolase; putative [Ruegeria pomeroyi DSS-3] AAV96198.1 47 6 4 4 1262 prephenate dehydrogenase [Ruegeria pomeroyi DSS-3] AAV96411.1 33 7 6 3 1263 deoxyribose-phosphate aldolase [Ruegeria pomeroyi DSS-3] AAV96594.2 36 5 5 3 1264 hypothetical protein SPO3769 [Ruegeria pomeroyi DSS-3] AAV96990.1 16 5 5 6 1265 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [Ruegeria pomeroyi] WP_011046174.1 42 5 5 6 1266 LuxR C-terminal-related transcriptional regulator [Ruegeria pomeroyi] WP_011047084.1 24 6 5 3 1267 ABC transporter ATP-binding protein [Ruegeria pomeroyi] WP_011047568.1 36 5 5 6 1268 MBL fold metallo-hydrolase [Ruegeria pomeroyi] WP_011048442.1 29 4 5 5 1269 AMP-binding protein [Ruegeria pomeroyi] WP_011048972.1 43 6 5 5 1270 DUF1636 domain-containing protein [Ruegeria pomeroyi] WP_044028577.1 13 4 4 4 1271 NAD(P)-dependent oxidoreductase [Ruegeria pomeroyi] WP_044029257.1 31 6 4 5 1272 hydrophobe/amphiphile efflux-1 family protein [Ruegeria pomeroyi DSS-3] AAV94684.1 110 3 2 5 1273 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ [Ruegeria pomeroyi DSS-3] AAV94957.1 17 3 3 3 1274 trimethylamine methyltransferase family protein [Ruegeria pomeroyi DSS-3] AAV95379.1 55 3 5 2 1275 thioesterase family protein [Ruegeria pomeroyi DSS-3] AAV94091.1 15 4 5 2 1276 endoribonuclease L-PSP family protein [Ruegeria pomeroyi DSS-3] AAV96190.1 12 2 2 2 1277 diaminopimelate epimerase [Ruegeria pomeroyi DSS-3] AAV93597.1 29 4 5 3 1278 acyl-CoA dehydrogenase family protein [Ruegeria pomeroyi DSS-3] AAV93616.1 60 4 3 3 1279 arginine decarboxylase [Ruegeria pomeroyi DSS-3] AAV93917.1 (+1) 73 6 5 5 1280 hypothetical protein SPO0894 [Ruegeria pomeroyi DSS-3] AAV94199.1 (+1) 10 4 4 4 1281 phenazine biosynthesis protein; PhzF family [Ruegeria pomeroyi DSS-3] AAV94202.1 31 5 4 4 1282 DNA-binding response regulator CtrA [Ruegeria pomeroyi DSS-3] AAV94964.1 27 5 6 5 1283 hypothetical protein SPO1804 [Ruegeria pomeroyi DSS-3] AAV95083.1 25 4 3 3 1284 sodium/solute symporter family protein [Ruegeria pomeroyi DSS-3] AAV95089.1 63 3 4 4 1285 ornithine-acyl [acyl carrier protein] N-acyltransferase [Ruegeria pomeroyi DSS-3] AAV95256.1 28 5 7 4 1286 molybdenum cofactor biosynthesis protein A [Ruegeria pomeroyi DSS-3] AAV95421.1 41 4 5 6 1287 aminotransferase; classes I and II [Ruegeria pomeroyi DSS-3] AAV96263.1 (+1) 40 5 5 5 1288 dimethylglycine dehydrogenase [Ruegeria pomeroyi DSS-3] AAV96627.1 90 4 5 6 1289 hypothetical protein SPO3512 [Ruegeria pomeroyi DSS-3] AAV96737.1 (+1) 32 4 4 4 1290 mandelate racemase/muconate lactonizing enzyme family protein [Ruegeria pomeroyi DSS-3] AAV96830.1 34 5 6 4 1291 glycerophosphoryl diester phosphodiesterase; putative [Ruegeria pomeroyi DSS-3] AAV96952.1 27 4 4 3 1292 hypothetical protein SPO3754 [Ruegeria pomeroyi DSS-3] AAV96975.1 26 5 5 3 1293 ribose ABC transporter; periplasmic ribose-binding protein (plasmid) [Ruegeria pomeroyi DSS-3] AAV97390.1 36 4 4 4 1294 unnamed protein product [Ruegeria pomeroyi DSS-3] CAV25261.1 50 4 3 3 1295 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG [Ruegeria pomeroyi] WP_011045773.1 68 5 3 7 1296 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase [Ruegeria pomeroyi] WP_011045917.1 31 4 3 5 1297 polyprenyl synthetase family protein [Ruegeria pomeroyi] WP_011046010.1 31 4 5 7 1298 glycosyltransferase family 4 protein [Ruegeria pomeroyi] WP_011046311.1 45 5 5 4 1299 FAD-binding oxidoreductase [Ruegeria pomeroyi] WP_011046393.1 38 6 3 5 1300 glycerol-3-phosphate dehydrogenase [Ruegeria pomeroyi] WP_011046481.1 58 5 5 4 1301 L-serine ammonia-lyase [Ruegeria pomeroyi] WP_011047062.1 48 5 6 4 1302 riboflavin synthase [Ruegeria pomeroyi] WP_011047493.1 20 3 4 4 1303 SDR family NAD(P)-dependent oxidoreductase [Ruegeria pomeroyi] WP_011047696.1 32 5 5 5 1304 histidine phosphotransferase family protein [Ruegeria pomeroyi] WP_011047714.1 21 5 6 4 1305 Rrf2 family transcriptional regulator [Ruegeria pomeroyi] WP_011047752.1 16 3 6 4 1306 DUF502 domain-containing protein [Ruegeria pomeroyi] WP_011047788.1 25 5 4 6 1307 MerR family DNA-binding transcriptional regulator [Ruegeria pomeroyi] WP_011048614.1 16 4 4 5 1308 PAS-domain containing protein [Ruegeria pomeroyi] WP_011048980.1 69 4 4 6 1309 hypothetical protein [Ruegeria pomeroyi] WP_011049007.1 42 7 3 5 1310 FAD-dependent oxidoreductase [Ruegeria pomeroyi] WP_011049079.1 90 4 5 5 1311 hypothetical protein [Ruegeria pomeroyi] WP_011049267.1 22 3 4 4 1312 hypothetical protein [Ruegeria pomeroyi] WP_044028882.1 21 4 4 3 1313 exoV domain protein [Ruegeria pomeroyi DSS-3] AAV95292.1 30 4 4 3 1314 5-(carboxyamino)imidazole ribonucleotide synthase [Ruegeria pomeroyi] WP_011046641.1 38 4 2 4 1315 ribokinase [Ruegeria pomeroyi DSS-3] AAV93344.1 31 4 2 3 1316 hypothetical protein SPO1978 [Ruegeria pomeroyi DSS-3] AAV95254.1 43 4 2 4 1317 4-hydroxy-tetrahydrodipicolinate reductase [Ruegeria pomeroyi] WP_011049505.1 28 6 2 2 1318 hypothetical protein [Ruegeria pomeroyi] WP_011047482.1 11 5 5 4 1319 hypothetical protein SPO1135 [Ruegeria pomeroyi DSS-3] AAV94435.1 20 5 2 6 1320 PKD domain protein [Ruegeria pomeroyi DSS-3] AAV93886.1 170 2 1 2 1321 extensin family protein [Ruegeria pomeroyi] WP_011048865.1 31 3 2 3 1322 phosphoglycerate mutase family protein [Ruegeria pomeroyi DSS-3] AAV93840.1 19 6 4 0 1323 hypothetical protein SPO0136 [Ruegeria pomeroyi DSS-3] AAV93464.1 74 6 3 4 1324 glycerophosphoryl diester phosphodiesterase family protein [Ruegeria pomeroyi DSS-3] AAV93619.1 66 3 5 5 1325 sugar ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV93925.1 39 5 6 4 1326 acyl-CoA dehydrogenase family protein [Ruegeria pomeroyi DSS-3] AAV94080.1 40 4 6 5 1327 hydrolase; alpha/beta fold family [Ruegeria pomeroyi DSS-3] AAV94190.1 33 5 3 3 1328 hypothetical protein SPO1185 [Ruegeria pomeroyi DSS-3] AAV94481.1 30 3 4 4 1329 hypothetical protein SPO1290 [Ruegeria pomeroyi DSS-3] AAV94582.1 21 4 6 5 1330 methyltransferase; FkbM family [Ruegeria pomeroyi DSS-3] AAV94644.1 25 5 5 3 1331 tyrosine recombinase XerD [Ruegeria pomeroyi DSS-3] AAV94919.1 35 3 3 3 1332 hypothetical protein SPO1991 [Ruegeria pomeroyi DSS-3] AAV95267.1 (+1) 29 5 4 4 1333 benzoate-coenzyme A ligase; putative [Ruegeria pomeroyi DSS-3] AAV95340.1 53 4 5 4 1334 methyltransferase; FkbM family [Ruegeria pomeroyi DSS-3] AAV95895.1 26 3 4 5 1335 TPR/sulfotransferase domain protein [Ruegeria pomeroyi DSS-3] AAV96144.1 63 5 4 6 1336 hypothetical protein SPO2974 [Ruegeria pomeroyi DSS-3] AAV96212.1 46 3 6 4 1337 Holliday junction DNA helicase RuvB [Ruegeria pomeroyi DSS-3] AAV96350.1 38 5 4 5 1338 branched-chain amino acid ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV96522.1 33 3 3 3 1339 peptidase; family S49 [Ruegeria pomeroyi DSS-3] AAV96863.1 (+1) 31 5 3 3 1340 cytidylate kinase (plasmid) [Ruegeria pomeroyi DSS-3] AAV97157.1 22 3 4 4 1341 oxidoreductase; zinc-binding dehydrogenase family (plasmid) [Ruegeria pomeroyi DSS-3] AAV97561.1 38 4 4 6 1342 hypothetical protein SPO1310a [Ruegeria pomeroyi DSS-3] AHB86017.1 11 5 3 4 1343 RecName: Full=Peptide chain release factor 1; Short=RF-1 Q5LQM7.1 39 4 5 6 1344 esterase-like activity of phytase family protein [Ruegeria pomeroyi] WP_011045896.1 32 4 4 6 1345 BamA/TamA family outer membrane protein [Ruegeria pomeroyi] WP_011046617.1 64 5 5 5 1346 N-acetyltransferase [Ruegeria pomeroyi] WP_011046637.1 17 3 3 4 1347 TerB family tellurite resistance protein [Ruegeria pomeroyi] WP_011047049.1 16 5 5 5 1348 aminomethyltransferase family protein [Ruegeria pomeroyi] WP_011047316.1 42 4 4 3 1349 DsbA family oxidoreductase [Ruegeria pomeroyi] WP_011047796.1 24 5 4 5 1350 DsbE family thiol:disulfide interchange protein [Ruegeria pomeroyi] WP_011048031.1 19 4 4 4 1351 nucleoside triphosphate pyrophosphohydrolase [Ruegeria pomeroyi] WP_011048178.1 31 4 5 3 1352 DNA repair protein RadA [Ruegeria pomeroyi] WP_011048376.1 47 3 4 5 1353 NADH-quinone oxidoreductase subunit M [Ruegeria pomeroyi] WP_011048463.1 56 3 3 3 1354 YmdB family metallophosphoesterase [Ruegeria pomeroyi] WP_011048652.1 29 3 5 5 1355 SURF1 family protein [Ruegeria pomeroyi] WP_011048765.1 25 4 6 3 1356 ribonuclease E/G [Ruegeria pomeroyi] WP_011241862.1 36 4 5 6 1357 thioesterase family protein [Ruegeria pomeroyi DSS-3] AAV96152.1 (+1) 17 3 4 4 1358 nitrogen regulation protein NtrC [Ruegeria pomeroyi DSS-3] AAV95358.1 50 2 5 5 1359 guanylate cyclase [Ruegeria pomeroyi] WP_011049330.1 65 3 2 3 1360 TPR domain protein [Ruegeria pomeroyi DSS-3] AAV94482.1 42 5 2 4 1361 ABC transporter permease subunit [Ruegeria pomeroyi] WP_011047044.1 33 3 5 5 1362 NADH:flavin oxidoreductase [Ruegeria pomeroyi] WP_011045935.1 75 2 4 5 1363 class II histone deacetylase [Ruegeria pomeroyi] WP_011048885.1 39 3 3 2 1364 Iron-sulfur cluster assembly family protein [Ruegeria pomeroyi DSS-3] AAV95756.1 11 2 3 2 1365 transcriptional regulator; putative [Ruegeria pomeroyi DSS-3] AAV94326.1 47 4 2 2 1366 DegT/DnrJ/EryC1/StrS family aminotransferase [Ruegeria pomeroyi] WP_011048495.1 43 4 4 2 1367 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ruegeria pomeroyi] WP_011046930.1 49 2 5 4 1368 MULTISPECIES: 30S ribosomal protein S21 [Rhodobacterales] WP_008207378.1 8 3 3 1 1369 cytochrome aa3-controlling protein [Ruegeria pomeroyi DSS-3] AAV95325.2 42 2 2 0 1370 3-deoxy-D-manno-octulosonate cytidylyltransferase [Ruegeria pomeroyi DSS-3] AAV93369.1 29 5 4 5 1371 hypothetical protein SPO0137 [Ruegeria pomeroyi DSS-3] AAV93465.1 98 6 4 3 1372 glutamate/glutamine/aspartate/asparagine ABC transporter; permease protein [Ruegeria pomeroyi DSS-3] AAV93837.1 47 5 3 5 1373 L-lactate dehydrogenase; putative [Ruegeria pomeroyi DSS-3] AAV94118.1 42 5 4 3 1374 hypothetical protein SPO0827 [Ruegeria pomeroyi DSS-3] AAV94132.1 (+1) 21 5 4 5 1375 citrate lyase; putative [Ruegeria pomeroyi DSS-3] AAV94852.1 35 5 4 4 1376 DNA-binding response regulator [Ruegeria pomeroyi DSS-3] AAV94911.1 25 3 4 5 1377 branched-chain amino acid ABC transporter; periplasmic branched-chain amino acid binding protein [Ruegeria pomeroyi DSS-3] AAV95109.1 40 4 3 6 1378 no change [Ruegeria pomeroyi DSS-3] AAV95390.1 38 5 5 4 1379 iron-sulfur cluster assembly accessory protein [Ruegeria pomeroyi DSS-3] AAV95865.1 (+1) 14 4 4 3 1380 bmp family protein [Ruegeria pomeroyi DSS-3] AAV96043.1 (+1) 38 4 3 4 1381 precorrin-6Y C5;15-methyltransferase (decarboxylating) [Ruegeria pomeroyi DSS-3] AAV96110.1 42 5 4 5 1382 hypothetical protein SPO2990 [Ruegeria pomeroyi DSS-3] AAV96228.1 42 4 3 3 1383 hypothetical protein SPO3568 [Ruegeria pomeroyi DSS-3] AAV96793.1 (+1) 21 5 4 3 1384 monooxygenase; putative [Ruegeria pomeroyi DSS-3] AAV96913.1 43 4 6 5 1385 transcriptional regulator; LuxR family (plasmid) [Ruegeria pomeroyi DSS-3] AAV97178.1 (+1) 44 4 3 6 1386 LptA/OstA family protein [Ruegeria pomeroyi] WP_011045853.1 17 3 3 3 1387 betaine-aldehyde dehydrogenase [Ruegeria pomeroyi] WP_011045857.1 51 5 4 4 1388 acyl-CoA synthetase [Ruegeria pomeroyi] WP_011046428.1 59 5 4 5 1389 amino acid synthesis family protein [Ruegeria pomeroyi] WP_011046575.1 20 7 4 3 1390 hypothetical protein [Ruegeria pomeroyi] WP_011047638.1 20 4 4 5 1391 MBL fold metallo-hydrolase [Ruegeria pomeroyi] WP_011047765.1 28 4 4 4 1392 DUF1330 domain-containing protein [Ruegeria pomeroyi] WP_011048606.1 16 4 3 3 1393 DNA recombination protein RmuC [Ruegeria pomeroyi] WP_011049044.1 45 5 4 4 1394 30S ribosome-binding factor RbfA [Ruegeria pomeroyi] WP_011049506.1 15 3 5 6 1395 MULTISPECIES: DUF6280 family protein [Ruegeria] WP_044028028.1 11 3 4 4 1396 lipid-A-disaccharide synthase [Ruegeria pomeroyi] WP_044028136.1 41 4 3 6 1397 single-stranded-DNA-specific exonuclease RecJ [Ruegeria pomeroyi] WP_044029190.1 61 3 3 4 1398 sensor histidine kinase RegB [Ruegeria pomeroyi DSS-3] AAV97081.1 51 3 2 5 1399 hypothetical protein SPO1164 [Ruegeria pomeroyi DSS-3] AAV94463.1 (+1) 11 3 4 3 1400 antibiotic biosynthesis monooxygenase domain protein [Ruegeria pomeroyi DSS-3] AAV93780.1 12 2 4 3 1401 methyltransferase; FkbM family [Ruegeria pomeroyi DSS-3] AAV95293.1 34 5 4 3 1402 GNAT family N-acetyltransferase [Ruegeria pomeroyi] WP_011048937.1 20 5 2 6 1403 2-hydroxychromene-2-carboxylate isomerase; putative [Ruegeria pomeroyi DSS-3] AAV93703.1 22 3 3 5 1404 hypothetical protein SPO1233 [Ruegeria pomeroyi DSS-3] AAV94528.1 126 2 4 2 1405 preprotein translocase; SecG subunit [Ruegeria pomeroyi DSS-3] AAV94602.1 12 3 3 3 1406 N-(5'phosphoribosyl)anthranilate isomerase [Ruegeria pomeroyi DSS-3] AAV94111.1 23 6 2 3 1407 glycine betaine/proline ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV94432.1 38 4 2 4 1408 acyl-CoA dehydrogenase family protein [Ruegeria pomeroyi DSS-3] AAV95244.1 42 3 2 4 1409 MiaB-like tRNA modifying enzyme [Ruegeria pomeroyi DSS-3] AAV93598.1 46 2 4 6 1410 endoribonuclease L-PSP family protein (plasmid) [Ruegeria pomeroyi DSS-3] AAV97532.1 15 3 3 3 1411 TerB family tellurite resistance protein [Ruegeria pomeroyi] WP_011047048.1 16 2 5 4 1412 hypothetical protein [Ruegeria pomeroyi] WP_011049019.1 12 3 4 4 1413 cyclic pyranopterin monophosphate synthase MoaC [Ruegeria pomeroyi] WP_011047875.1 16 3 3 3 1414 RidA family protein [Ruegeria pomeroyi] WP_011047730.1 13 2 2 2 1415 efflux transporter; RND family; MFP subunit [Ruegeria pomeroyi DSS-3] AAV93610.1 52 1 5 4 1416 methylmalonyl-CoA mutase [Ruegeria pomeroyi DSS-3] AAV93686.1 73 3 5 5 1417 glyoxalase family protein [Ruegeria pomeroyi DSS-3] AAV93988.1 21 3 4 3 1418 hypothetical protein SPO1805 [Ruegeria pomeroyi DSS-3] AAV95084.1 17 4 5 4 1419 DNA-3-methyladenine glycosylase I [Ruegeria pomeroyi DSS-3] AAV95178.1 23 4 4 3 1420 autoinducer-binding transcriptional regulator; LuxR family [Ruegeria pomeroyi DSS-3] AAV95250.1 (+1) 28 4 4 4 1421 DNA-binding protein; putative [Ruegeria pomeroyi DSS-3] AAV95339.1 23 4 3 4 1422 agmatinase [Ruegeria pomeroyi DSS-3] AAV95718.1 34 4 5 4 1423 hypothetical protein SPO2648 [Ruegeria pomeroyi DSS-3] AAV95893.1 (+1) 26 3 4 4 1424 hypothetical protein SPO3054 [Ruegeria pomeroyi DSS-3] AAV96290.1 26 4 3 4 1425 hypothetical protein SPOA0322 (plasmid) [Ruegeria pomeroyi DSS-3] AAV97454.1 41 3 3 4 1426 gamma-glutamyltransferase family protein [Ruegeria pomeroyi] WP_011046615.1 64 3 3 3 1427 metalloregulator ArsR/SmtB family transcription factor [Ruegeria pomeroyi] WP_011047025.1 28 4 3 4 1428 LPS export ABC transporter permease LptG [Ruegeria pomeroyi] WP_011048163.1 40 4 3 4 1429 tetratricopeptide repeat protein [Ruegeria pomeroyi] WP_011048786.1 21 3 3 3 1430 ribonuclease III [Ruegeria pomeroyi] WP_011048888.1 24 4 4 4 1431 NlpC/P60 family protein [Ruegeria pomeroyi] WP_011049396.1 27 3 4 3 1432 ornithine cyclodeaminase family protein [Ruegeria pomeroyi] WP_011049503.1 33 3 6 5 1433 MULTISPECIES: helix-turn-helix domain-containing protein [Ruegeria] WP_193385774.1 23 4 3 3 1434 dephospho-CoA kinase [Ruegeria pomeroyi] WP_011049561.1 21 2 5 4 1435 transcriptional regulator; ArsR family (plasmid) [Ruegeria pomeroyi DSS-3] AAV97558.1 12 5 4 3 1436 ribosomal large subunit pseudouridine synthase C [Ruegeria pomeroyi DSS-3] AAV93833.1 38 2 5 5 1437 dihydroorotate dehydrogenase family protein [Ruegeria pomeroyi DSS-3] AAV95056.1 47 2 3 3 1438 rod shape-determining protein MreC [Ruegeria pomeroyi DSS-3] AAV93737.1 (+1) 34 4 2 3 1439 HlyD family efflux transporter periplasmic adaptor subunit [Ruegeria pomeroyi] WP_011045884.1 38 2 3 4 1440 hypothetical protein SPO0587 [Ruegeria pomeroyi DSS-3] AAV93902.1 45 4 2 3 1441 leucine-responsive regulatory protein; putative [Ruegeria pomeroyi DSS-3] AAV94209.1 18 4 3 1 1442 FtsX-like permease family protein [Ruegeria pomeroyi] WP_011046099.1 31 5 4 3 1443 ribosome maturation factor RimM [Ruegeria pomeroyi] WP_011048945.1 18 4 2 4 1444 transcriptional regulator; MarR family [Ruegeria pomeroyi DSS-3] AAV96910.1 18 2 2 4 1445 hypothetical protein SPO1007 [Ruegeria pomeroyi DSS-3] AAV94311.1 15 3 2 2 1446 tautomerase (plasmid) [Ruegeria pomeroyi DSS-3] AAV97472.1 8 2 6 2 1447 cytochrome c biogenesis family protein [Ruegeria pomeroyi DSS-3] AAV95160.1 17 2 2 2 1448 polyamine ABC transporter; permease protein [Ruegeria pomeroyi DSS-3] AAV96701.1 34 2 2 2 1449 endoribonuclease L-PSP family protein [Ruegeria pomeroyi DSS-3] AAV96902.1 16 2 2 2 1450 Na(+)-translocating NADH-quinone reductase subunit B (plasmid) [Ruegeria pomeroyi DSS-3] AAV97169.1 44 4 3 2 1451 TlpA family protein disulfide reductase [Ruegeria pomeroyi] WP_011046092.1 20 4 3 1 1452 type I secretion target repeat protein [Ruegeria pomeroyi DSS-3] AAV95961.1 831 1 0 1 1453 Na+/H+ antiporter subunit G [Ruegeria pomeroyi] WP_011048598.1 14 0 2 0 1454 ATP phosphoribosyltransferase; putative [Ruegeria pomeroyi DSS-3] AAV93977.1 25 4 3 6 1455 transcriptional regulator; LysR family [Ruegeria pomeroyi DSS-3] AAV94284.1 (+1) 35 3 4 4 1456 cell division protein ftsQ [Ruegeria pomeroyi DSS-3] AAV94498.1 37 3 3 5 1457 gamma-glutamylmethylamide synthase [Ruegeria pomeroyi DSS-3] AAV94860.1 49 3 3 5 1458 hypothetical protein SPO1802 [Ruegeria pomeroyi DSS-3] AAV95081.1 8 4 3 4 1459 hypothetical protein SPO2223 [Ruegeria pomeroyi DSS-3] AAV95489.1 15 3 3 3 1460 peptide/nickel/opine uptake family ABC transporter; permease protein [Ruegeria pomeroyi DSS-3] AAV96057.2 33 4 4 4 1461 oxidoreductase; FAD-binding protein [Ruegeria pomeroyi DSS-3] AAV96302.1 50 3 4 6 1462 hypothetical protein SPO3114 [Ruegeria pomeroyi DSS-3] AAV96349.2 23 4 3 5 1463 ATP-dependent protease La domain protein [Ruegeria pomeroyi DSS-3] AAV96648.2 24 3 3 3 1464 3;4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II [Ruegeria pomeroyi DSS-3] AAV96653.1 39 5 3 5 1465 tRNA (guanine-N(7)-)-methyltransferase (plasmid) [Ruegeria pomeroyi DSS-3] AAV97155.1 27 4 3 3 1466 unnamed protein product [Ruegeria pomeroyi DSS-3] CBV29246.1 37 3 4 5 1467 RecName: Full=S-adenosylmethionine:tRNA ribosyltransferase-isomerase; AltName: Full=Queuosine biosynthesis protein QueA Q5LRA3.1 38 4 4 3 1468 alpha/beta fold hydrolase [Ruegeria pomeroyi] WP_011046482.1 35 3 3 6 1469 acetyl-CoA acetyltransferase [Ruegeria pomeroyi] WP_011046761.1 40 3 5 4 1470 GntR family transcriptional regulator [Ruegeria pomeroyi] WP_011047107.1 26 3 3 3 1471 PAS-domain containing protein [Ruegeria pomeroyi] WP_011047242.1 81 3 4 4 1472 acyl-CoA dehydrogenase family protein [Ruegeria pomeroyi] WP_011047698.1 39 5 3 3 1473 ABC transporter ATP-binding protein [Ruegeria pomeroyi] WP_011049321.1 34 4 3 4 1474 Chain A; Enoyl-CoA hydratase/isomerase family protein gi|510102097|pdb|4IZD|A 30 3 5 4 1475 pyruvate dehydrogenase complex repressor [Ruegeria pomeroyi DSS-3] AAV96466.1 29 3 5 4 1476 MULTISPECIES: virulence factor [Ruegeria] WP_011047594.1 11 3 3 3 1477 osmC-like family protein [Ruegeria pomeroyi DSS-3] AAV95563.1 43 2 4 4 1478 hypothetical protein SPO1271 [Ruegeria pomeroyi DSS-3] AAV94563.1 (+1) 52 5 2 5 1479 hypothetical protein SPO2208 [Ruegeria pomeroyi DSS-3] AAV95474.1 32 5 5 2 1480 sugar ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV96044.1 54 2 4 2 1481 hypothetical protein SPO1693 [Ruegeria pomeroyi DSS-3] AAV94978.1 60 3 2 4 1482 glycine C-acetyltransferase [Ruegeria pomeroyi] WP_011049043.1 43 3 2 4 1483 MaoC domain protein [Ruegeria pomeroyi DSS-3] AAV94119.1 17 2 2 2 1484 acyl-carrier domain protein [Ruegeria pomeroyi DSS-3] AAV93901.1 37 2 3 4 1485 unnamed protein product [Ruegeria pomeroyi DSS-3] CBV16060.1 71 2 4 2 1486 FxsA family protein [Ruegeria pomeroyi] WP_011049558.1 18 3 3 3 1487 lipoprotein; putative [Ruegeria pomeroyi DSS-3] AAV94637.1 19 3 2 4 1488 acyl-CoA thioesterase [Ruegeria pomeroyi] WP_011047194.1 16 2 2 2 1489 hypothetical protein SPO2567 [Ruegeria pomeroyi DSS-3] AAV95815.1 17 2 3 2 1490 pirin domain protein [Ruegeria pomeroyi DSS-3] AAV95017.1 33 3 2 3 1491 DUF2147 domain-containing protein [Ruegeria pomeroyi] WP_011046905.1 14 3 2 3 1492 RecName: Full=Tetraacyldisaccharide 4'-kinase; AltName: Full=Lipid A 4'-kinase Q5LMW7.1 35 2 3 5 1493 hypothetical protein [Ruegeria pomeroyi] WP_011046812.1 48 2 4 6 1494 glycosyltransferase family 4 protein [Ruegeria pomeroyi] WP_011048501.1 38 3 3 5 1495 Manganese uptake regulator [Ruegeria pomeroyi DSS-3] AAV95731.1 16 2 2 2 1496 hypothetical protein SPO0746 [Ruegeria pomeroyi DSS-3] AAV94051.1 (+1) 49 3 4 2 1497 RecName: Full=Type III pantothenate kinase; AltName: Full=PanK-III; AltName: Full=Pantothenic acid kinase Q5LPT8.1 28 3 2 2 1498 phosphate ABC transporter; periplasmic phosphate-binding protein [Ruegeria pomeroyi DSS-3] AAV95224.1 36 3 4 3 1499 type I restriction-modification system; S subunit [Ruegeria pomeroyi DSS-3] AAV95976.1 48 3 1 3 1500 FAD-dependent oxidoreductase [Ruegeria pomeroyi] WP_011046320.1 88 2 2 2 1501 hypothetical protein [Ruegeria pomeroyi] WP_011046647.1 32 4 4 2 1502 cold shock domain-containing protein [Ruegeria pomeroyi] WP_011047863.1 19 2 4 3 1503 RecName: Full=50S ribosomal protein L33 Q5LP83.1 6 2 2 3 1504 hydroxyisourate hydrolase [Ruegeria pomeroyi] WP_011046620.1 13 2 0 2 1505 agmatinase [Ruegeria pomeroyi] WP_011046355.1 30 3 0 1 1506 peroxidase family protein [Ruegeria pomeroyi DSS-3] AAV94052.1-DECOY (+1) nd 0 1 0 1507 acyl-CoA dehydrogenase [Ruegeria pomeroyi DSS-3] AAV93897.1 42 3 3 3 1508 DNA-binding response regulator; LuxR family [Ruegeria pomeroyi DSS-3] AAV94794.1 25 4 4 4 1509 hypothetical protein SPO2296 [Ruegeria pomeroyi DSS-3] AAV95558.1 30 4 3 4 1510 hypothetical protein SPO3652 [Ruegeria pomeroyi DSS-3] AAV96875.1 (+1) 20 5 3 4 1511 acetyltransferase; GNAT family [Ruegeria pomeroyi DSS-3] AAV96979.1 26 3 3 3 1512 RecName: Full=Phosphopantetheine adenylyltransferase; AltName: Full=Dephospho-CoA pyrophosphorylase; AltName: Full=Pantetheine-phosphate adenylyltransferase; Short=PPAT Q5LRC9.1 18 4 3 3 1513 NAD(P)H-dependent oxidoreductase subunit E [Ruegeria pomeroyi] WP_011046582.1 61 4 3 4 1514 tripartite tricarboxylate transporter substrate binding protein [Ruegeria pomeroyi] WP_011046820.1 33 4 4 4 1515 SLC13 family permease [Ruegeria pomeroyi] WP_011046823.1 62 3 5 3 1516 autoinducer synthase [Ruegeria pomeroyi] WP_011048005.1 31 3 4 4 1517 TIM barrel protein [Ruegeria pomeroyi] WP_011048268.1 27 3 3 3 1518 50S ribosomal protein L11 methyltransferase [Ruegeria pomeroyi] WP_011048810.1 30 4 4 3 1519 SDR family oxidoreductase [Ruegeria pomeroyi] WP_011049052.1 28 3 4 4 1520 peptidoglycan DD-metalloendopeptidase family protein [Ruegeria pomeroyi] WP_011049483.1 40 3 4 4 1521 alpha/beta fold hydrolase [Ruegeria pomeroyi] WP_011049554.1 40 4 3 3 1522 2-oxo-hepta-3-ene-1;7-dioic acid hydratase [Ruegeria pomeroyi] WP_011241808.1 29 4 4 3 1523 transporter substrate-binding domain-containing protein [Ruegeria pomeroyi] WP_011241853.1 27 3 4 3 1524 MOSC domain protein (plasmid) [Ruegeria pomeroyi DSS-3] AAV97305.1 26 3 2 3 1525 primosomal protein N' [Ruegeria pomeroyi DSS-3] AAV96362.1 (+1) 80 3 2 4 1526 alanine dehydrogenase [Ruegeria pomeroyi] WP_011045990.1 39 3 5 4 1527 3-keto-5-aminohexanoate cleavage protein [Ruegeria pomeroyi] WP_011241826.1 31 4 3 3 1528 FAD-dependent oxidoreductase [Ruegeria pomeroyi] WP_011049346.1 45 5 3 2 1529 hypothetical protein SPO3679 [Ruegeria pomeroyi DSS-3] AAV96901.1 23 3 3 2 1530 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA [Ruegeria pomeroyi] WP_011048704.1 120 4 2 4 1531 sulfur oxidation c-type cytochrome SoxA [Ruegeria pomeroyi] WP_011046744.1 31 3 2 4 1532 iojap-related protein [Ruegeria pomeroyi DSS-3] AAV93544.1 (+1) 14 2 2 3 1533 8-oxo-dGTP diphosphatase MutT [Ruegeria pomeroyi] WP_011045833.1 15 2 2 2 1534 branched-chain amino acid ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV95214.1 32 5 3 2 1535 alpha/beta hydrolase [Ruegeria pomeroyi] WP_011047026.1 27 5 2 2 1536 esterase; putative [Ruegeria pomeroyi DSS-3] AAV95010.1 33 3 3 2 1537 glycosyltransferase [Ruegeria pomeroyi] WP_011047270.1 40 3 2 2 1538 PQQ-dependent sugar dehydrogenase [Ruegeria pomeroyi] WP_011047671.1 39 3 2 2 1539 hydrolase; TatD family [Ruegeria pomeroyi DSS-3] AAV95983.1 30 3 2 3 1540 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2 [Ruegeria pomeroyi DSS-3] AAV95536.1 27 3 2 3 1541 trimethylamine methyltransferase family protein [Ruegeria pomeroyi DSS-3] AAV95991.1 57 2 2 5 1542 RecName: Full=Recombination protein RecR Q5LMJ4.1 21 3 4 3 1543 AAA family ATPase [Ruegeria pomeroyi] WP_030003250.1 45 3 2 3 1544 epsK domain protein [Ruegeria pomeroyi DSS-3] AAV96546.1 62 2 3 1 1545 hypothetical protein SPO2520 [Ruegeria pomeroyi DSS-3] AAV95770.1 43 5 3 2 1546 (2Fe-2S)-binding protein [Ruegeria pomeroyi] WP_011048111.1 18 3 3 2 1547 CCA tRNA nucleotidyltransferase [Ruegeria pomeroyi] WP_011045798.1 41 3 3 2 1548 PaaX domain protein [Ruegeria pomeroyi DSS-3] AAV94039.1 30 4 1 4 1549 hypothetical protein SPO1103 [Ruegeria pomeroyi DSS-3] AAV94403.1 (+1) 22 3 2 3 1550 von Willebrand factor type A domain protein [Ruegeria pomeroyi DSS-3] AAV95487.1 59 4 2 4 1551 hypothetical protein SPO2775 [Ruegeria pomeroyi DSS-3] AAV96016.1 18 4 2 3 1552 transcriptional regulator; GntR family (plasmid) [Ruegeria pomeroyi DSS-3] AAV97435.1 27 3 2 3 1553 DUF465 domain-containing protein [Ruegeria pomeroyi] WP_011046836.1 9 2 4 6 1554 hypothetical protein SPO3393 [Ruegeria pomeroyi DSS-3] AAV96620.1 15 3 4 3 1555 transcription regulator; TetR family [Ruegeria pomeroyi DSS-3] AAV95180.1 21 1 3 3 1556 methyltransferase; putative [Ruegeria pomeroyi DSS-3] AAV96959.1 20 3 2 2 1557 ATP-dependent protease subunit HslV [Ruegeria pomeroyi] WP_011049551.1 19 2 2 3 1558 xanthine dehydrogenase small subunit [Ruegeria pomeroyi] WP_011046405.1 49 1 3 2 1559 DUF1989 domain-containing protein [Ruegeria pomeroyi] WP_011046126.1 31 2 2 2 1560 hypothetical protein SPO0938 [Ruegeria pomeroyi DSS-3] AAV94243.1 (+1) 10 2 3 3 1561 RecName: Full=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1; AltName: Full=Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 1 Q5LU97.1 25 3 2 3 1562 C4-dicarboxylate transport sensor protein [Ruegeria pomeroyi DSS-3] AAV95875.1 62 2 5 4 1563 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/ 2C-methyl-D-erythritol 2;4-cyclodiphosphate synthase [Ruegeria pomeroyi DSS-3] AAV95361.1 46 1 3 7 1564 molybdenum ABC transporter ATP-binding protein [Ruegeria pomeroyi] WP_011046447.1 38 1 5 3 1565 unnamed protein product [Ruegeria pomeroyi DSS-3] CBF86485.1 28 0 2 4 1566 alpha/beta fold hydrolase [Ruegeria pomeroyi] WP_011047850.1 24 0 2 2 1567 hypothetical protein SPO2736 [Ruegeria pomeroyi DSS-3] AAV95978.1 34 4 4 0 1568 type II toxin-antitoxin system RatA family toxin [Ruegeria pomeroyi] WP_011047822.1 17 0 2 0 1569 carboxymuconolactone decarboxylase family protein [Ruegeria pomeroyi] WP_011242123.1 14 2 2 0 1570 deoxyuridine 5'-triphosphate nucleotidohydrolase [Ruegeria pomeroyi DSS-3] AAV93727.1 16 3 5 3 1571 copper-translocating P-type ATPase [Ruegeria pomeroyi DSS-3] AAV94099.1 85 4 4 3 1572 hypothetical protein SPO2084 [Ruegeria pomeroyi DSS-3] AAV95355.1 18 3 3 3 1573 anthranilate synthase component II [Ruegeria pomeroyi DSS-3] AAV95417.1 21 4 3 3 1574 carbon monoxide dehydrogenase; medium subunit [Ruegeria pomeroyi DSS-3] AAV95656.1 30 4 3 3 1575 D-isomer specific 2-hydroxyacid dehydrogenase family protein [Ruegeria pomeroyi DSS-3] AAV95677.1 33 4 4 3 1576 strictosidine synthase family protein [Ruegeria pomeroyi DSS-3] AAV96262.1 (+1) 43 4 3 3 1577 RecName: Full=Ribosomal RNA small subunit methyltransferase A; AltName: Full=16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase; AltName: Full=16S rRNA dimethyladenosine transferase; AltName: Full=16S rRNA dimethylase; AltName: Full=S-adenosylmethionine-6-N'; N'-adenosyl(rRNA) dimethyltransferase Q5LQN0.1 30 3 3 5 1578 N-acetylmuramoyl-L-alanine amidase [Ruegeria pomeroyi] WP_011048293.1 44 3 3 3 1579 PLP-dependent aminotransferase family protein [Ruegeria pomeroyi] WP_011048920.1 43 4 3 4 1580 response regulator transcription factor [Ruegeria pomeroyi] WP_011048981.1 26 4 3 3 1581 DUF427 domain-containing protein [Ruegeria pomeroyi] WP_011049138.1 57 4 3 4 1582 beta-ketoadipyl CoA thiolase [Ruegeria pomeroyi DSS-3] AAV94063.1 41 3 3 4 1583 cupin domain-containing protein [Ruegeria pomeroyi] WP_011047517.1 15 3 3 4 1584 hypothetical protein SPOA0095 (plasmid) [Ruegeria pomeroyi DSS-3] AAV97232.1 (+1) 39 2 3 3 1585 L-carnitine dehydrogenase [Ruegeria pomeroyi DSS-3] AAV94723.1 54 2 3 3 1586 exodeoxyribonuclease VII; large subunit [Ruegeria pomeroyi DSS-3] AAV94632.1 (+1) 53 3 3 2 1587 class I SAM-dependent methyltransferase [Ruegeria pomeroyi] WP_011049174.1 23 2 5 4 1588 zinc uptake regulation protein [Ruegeria pomeroyi DSS-3] AAV94290.1 17 3 2 2 1589 gamma-glutamylcyclotransferase [Ruegeria pomeroyi] WP_044029351.1 20 2 3 3 1590 hypothetical protein SPO3096 [Ruegeria pomeroyi DSS-3] AAV96331.1 (+1) 52 3 3 2 1591 pyrimidine 5'-nucleotidase [Ruegeria pomeroyi] WP_011047112.1 24 2 3 3 1592 SDR family oxidoreductase [Ruegeria pomeroyi] WP_011047697.1 28 2 3 2 1593 Maf [Ruegeria pomeroyi DSS-3] AAV97106.1 22 2 3 3 1594 alpha/beta hydrolase [Ruegeria pomeroyi] WP_011049502.1 31 2 3 3 1595 hypothetical protein [Ruegeria pomeroyi] WP_051420329.1 17 2 3 3 1596 RecName: Full=Ribose-5-phosphate isomerase A; AltName: Full=Phosphoriboisomerase A; Short=PRI Q5LTT5.1 28 2 3 3 1597 SRPBCC family protein [Ruegeria pomeroyi] WP_030003267.1 18 2 3 2 1598 SDR family oxidoreductase [Ruegeria pomeroyi] WP_011049317.1 28 5 3 3 1599 peptide/nickel/opine uptake family ABC transporter; permease protein [Ruegeria pomeroyi DSS-3] AAV96234.1 35 3 3 2 1600 aminotransferase class V-fold PLP-dependent enzyme [Ruegeria pomeroyi] WP_011048723.1 43 5 4 2 1601 Manganese ABC transporter; permease protein [Ruegeria pomeroyi DSS-3] AAV96591.1 42 4 3 2 1602 transcriptional regulator; LacI family (plasmid) [Ruegeria pomeroyi DSS-3] AAV97468.1 37 4 3 2 1603 hypothetical protein SPO2243 [Ruegeria pomeroyi DSS-3] AAV95509.1 (+1) 59 5 2 2 1604 GDSL-like lipase/acylhydrolase; putative [Ruegeria pomeroyi DSS-3] AAV96530.1 25 2 3 3 1605 RecName: Full=UPF0246 protein SPO0106 Q5LWQ9.1 28 2 3 3 1606 peroxiredoxin [Ruegeria pomeroyi] WP_011047829.1 20 2 3 3 1607 RecName: Full=1-deoxy-D-xylulose 5-phosphate reductoisomerase; Short=DXP reductoisomerase; AltName: Full=1-deoxyxylulose-5-phosphate reductoisomerase; AltName: Full=2-C-methyl-D-erythritol 4-phosphate synthase Q5LSU9.1 (+1) 42 2 3 3 1608 hypothetical protein SPO1412a [Ruegeria pomeroyi DSS-3] AHB86022.1 24 5 2 3 1609 monovalent cation:proton antiporter-2 (CPA2) family protein [Ruegeria pomeroyi] WP_011047161.1 68 5 3 2 1610 GNAT family N-acetyltransferase [Ruegeria pomeroyi] WP_011048941.1 23 2 2 4 1611 FAD-binding oxidoreductase [Ruegeria pomeroyi] WP_011047042.1 37 2 2 2 1612 pH adaption potassium efflux system protein PhaD [Ruegeria pomeroyi DSS-3] AAV96136.1 55 2 4 3 1613 hypothetical protein SPO2837 [Ruegeria pomeroyi DSS-3] AAV96078.1 28 2 3 3 1614 hydrolase; NUDIX family [Ruegeria pomeroyi DSS-3] AAV96766.1 35 2 2 2 1615 transcriptional regulator; putative [Ruegeria pomeroyi DSS-3] AAV93399.1 16 3 3 3 1616 ATP synthase F0; A subunit [Ruegeria pomeroyi DSS-3] AAV96471.1 (+1) 27 3 3 3 1617 RNA methyltransferase [Ruegeria pomeroyi] WP_011047781.1 28 1 2 3 1618 cytochrome P450 family protein [Ruegeria pomeroyi DSS-3] AAV93551.1 (+1) 45 2 1 2 1619 uroporphyrinogen-III C-methyltransferase [Ruegeria pomeroyi] WP_011048573.1 25 1 5 3 1620 hypothetical protein [Ruegeria pomeroyi] WP_044029224.1 33 1 2 2 1621 DctP family TRAP transporter solute-binding subunit [Ruegeria pomeroyi] WP_011242028.1 35 2 2 0 1622 sensor histidine kinase [Ruegeria pomeroyi DSS-3] AAV94910.1 49 0 2 2 1623 16S rRNA (cytidine(1402)-2'-O)-methyltransferase [Ruegeria pomeroyi] WP_011046160.1 30 0 3 3 1624 RlmE family RNA methyltransferase [Ruegeria pomeroyi] WP_011047591.1 25 1 3 0 1625 chaperonin csaA [Ruegeria pomeroyi DSS-3] AAV94217.1 12 1 0 2 1626 N-acetylmuramoyl-L-alanine amidase; putative [Ruegeria pomeroyi DSS-3] AAV96206.1 (+1) 24 0 1 1 1627 hypothetical protein [Ruegeria pomeroyi] WP_011046983.1 34 0 2 0 1628 serine hydroxymethyltransferase [Ruegeria pomeroyi DSS-3] AAV96754.1 (+1) 45 3 3 3 1629 cytochrome P450 family protein [Ruegeria pomeroyi DSS-3] AAV94069.1 48 3 4 2 1630 arsenate reductase (glutaredoxin) [Ruegeria pomeroyi] WP_011048608.1 13 3 2 3 1631 hypothetical protein SPO3836 [Ruegeria pomeroyi DSS-3] AAV97050.1 (+1) 26 2 3 3 1632 enoyl-CoA hydratase [Ruegeria pomeroyi] WP_011047702.1 29 2 4 3 1633 ATP-dependent DNA helicase RecG [Ruegeria pomeroyi DSS-3] AAV94966.1 76 2 4 2 1634 hypothetical protein [Ruegeria pomeroyi] WP_044029484.1 33 2 3 2 1635 DUF2059 domain-containing protein [Ruegeria pomeroyi] WP_011047723.1 31 4 3 2 1636 RecName: Full=Pyrroloquinoline-quinone synthase; AltName: Full=Coenzyme PQQ synthesis protein C; AltName: Full=Pyrroloquinoline quinone biosynthesis protein C Q5LTB2.1 27 2 2 2 1637 hypothetical protein SPOA0074 (plasmid) [Ruegeria pomeroyi DSS-3] AAV97578.1 15 4 3 2 1638 maleylacetoacetate isomerase [Ruegeria pomeroyi DSS-3] AAV93987.1 23 3 4 2 1639 hypothetical protein SPO0836 [Ruegeria pomeroyi DSS-3] AAV94141.1 19 2 3 2 1640 molybdenum cofactor biosynthesis protein MoaE [Ruegeria pomeroyi] WP_011049312.1 16 3 3 3 1641 thioredoxin SoxW [Ruegeria pomeroyi DSS-3] AAV94296.1 22 4 3 3 1642 hypothetical protein SPO1259 [Ruegeria pomeroyi DSS-3] AAV94551.1 23 3 2 3 1643 benzoyl-CoA 2;3-epoxidase subunit BoxA [Ruegeria pomeroyi] WP_044028834.1 44 3 2 3 1644 bifunctional nicotinamidase/pyrazinamidase [Ruegeria pomeroyi] WP_011045866.1 21 2 3 4 1645 N(2)-acetyl-L-2;4-diaminobutanoate deacetylase DoeB [Ruegeria pomeroyi] WP_011046886.1 (+1) 35 2 3 3 1646 transcriptional regulator SoxR [Ruegeria pomeroyi DSS-3] AAV94293.1 14 2 3 3 1647 unnamed protein product [Ruegeria pomeroyi DSS-3] CBF94442.1 35 3 2 3 1648 hypothetical protein SPO1627 [Ruegeria pomeroyi DSS-3] AAV94914.1 21 2 3 2 1649 NOL1/NOP2/sun family protein [Ruegeria pomeroyi DSS-3] AAV95309.1 41 4 2 2 1650 hypothetical protein SPO1907 [Ruegeria pomeroyi DSS-3] AAV95185.1 17 2 2 3 1651 TRAP transporter substrate-binding protein [Ruegeria pomeroyi] WP_011048075.1 45 2 3 3 1652 imidazoleglycerol-phosphate dehydratase [Ruegeria pomeroyi DSS-3] AAV94462.1 21 2 4 2 1653 hypothetical protein SPO0286 [Ruegeria pomeroyi DSS-3] AAV93604.1 19 2 2 3 1654 aspartate aminotransferase [Ruegeria pomeroyi DSS-3] AAV93899.1 41 2 2 3 1655 RecName: Full=Zinc import ATP-binding protein ZnuC Q5LUR8.1 27 2 2 3 1656 cytochrome c [Ruegeria pomeroyi] WP_011047825.1 16 3 2 3 1657 Asp/Glu/Hydantoin racemase family protein [Ruegeria pomeroyi DSS-3] AAV95704.1 26 2 2 2 1658 carbohydrate kinase; pfkB family [Ruegeria pomeroyi DSS-3] AAV97134.1 (+1) 36 2 2 2 1659 ribosome biogenesis GTP-binding protein YihA/YsxC [Ruegeria pomeroyi] WP_011046289.1 23 2 3 3 1660 hypothetical protein SPO1605 [Ruegeria pomeroyi DSS-3] AAV94892.1 60 1 2 1 1661 phosphoglycolate phosphatase [Ruegeria pomeroyi DSS-3] AAV94092.1 23 4 2 2 1662 hypothetical protein SPO2197 [Ruegeria pomeroyi DSS-3] AAV95463.1 34 2 3 2 1663 xanthine dehydrogenase molybdopterin binding subunit [Ruegeria pomeroyi] WP_011046404.1 83 1 3 3 1664 carbon-nitrogen hydrolase family protein [Ruegeria pomeroyi] WP_011045842.1 30 1 3 4 1665 ribonuclease HI [Ruegeria pomeroyi] WP_011048902.1 17 3 3 1 1666 transcriptional regulator; LacI family (plasmid) [Ruegeria pomeroyi DSS-3] AAV97376.1 (+1) 38 3 1 2 1667 site-2 protease family protein [Ruegeria pomeroyi] WP_011047373.1 38 3 3 0 1668 helicase; ATP-dependent; putative [Ruegeria pomeroyi DSS-3] AAV93691.1 (+1) 51 2 2 0 1669 ribose 5-phosphate isomerase B [Ruegeria pomeroyi] WP_011048870.1 16 2 0 3 1670 hypothetical protein SPO2421 [Ruegeria pomeroyi DSS-3] AAV95675.1 35 3 4 0 1671 apolipoprotein N-acyltransferase [Ruegeria pomeroyi] WP_011241795.1 53 0 2 2 1672 peptidase; M48 family [Ruegeria pomeroyi DSS-3] AAV95767.1 25 3 4 0 1673 oligopeptide/dipeptide ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV96998.1 38 3 3 0 1674 NADH dehydrogenase I; L subunit [Ruegeria pomeroyi DSS-3] AAV96006.1 77 2 0 2 1675 alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [Ruegeria pomeroyi] WP_011046640.1 40 4 3 0 1676 RecName: Full=dITP/XTP pyrophosphatase; AltName: Full=Non-canonical purine NTP pyrophosphatase; AltName: Full=Non-standard purine NTP pyrophosphatase; AltName: Full=Nucleoside-triphosphate diphosphatase; AltName: Full=Nucleoside-triphosphate pyrophosphatase; Short=NTPase Q5LWF7.1 22 3 3 3 1677 isopenicillin N synthase family oxygenase [Ruegeria pomeroyi] WP_011048371.1 34 3 3 3 1678 OmpA family protein [Ruegeria pomeroyi DSS-3] AAV94749.1 (+1) 43 2 3 3 1679 PfkB family carbohydrate kinase [Ruegeria pomeroyi] WP_011047786.1 31 3 3 2 1680 aspartate aminotransferase (plasmid) [Ruegeria pomeroyi DSS-3] AAV97206.1 41 2 3 3 1681 isocitrate lyase/phosphoenolpyruvate mutase family protein [Ruegeria pomeroyi] WP_011048995.1 27 4 2 3 1682 L-fuculose phosphate aldolase [Ruegeria pomeroyi DSS-3] AAV95810.1 23 2 2 3 1683 hypothetical protein [Ruegeria pomeroyi] WP_144083983.1 40 3 2 2 1684 SDR family oxidoreductase [Ruegeria pomeroyi] WP_011049434.1 31 2 3 3 1685 spermidine/putrescine ABC transporter; periplasmic substrate-binding protein (plasmid) [Ruegeria pomeroyi DSS-3] AAV97513.1 37 3 2 3 1686 carnitinyl-CoA dehydratase [Ruegeria pomeroyi] WP_011242064.1 29 3 2 3 1687 hypothetical protein SPO3174 [Ruegeria pomeroyi DSS-3] AAV96409.1 38 3 3 2 1688 precorrin-2 C(20)-methyltransferase [Ruegeria pomeroyi] WP_011048566.1 26 3 2 3 1689 methyltransferase; putative [Ruegeria pomeroyi DSS-3] AAV96878.1 34 2 2 2 1690 cytochrome c-550 PedF [Ruegeria pomeroyi] WP_011047252.1 23 2 2 3 1691 RecName: Full=Chromosomal replication initiator protein DnaA Q5LWV4.1 53 2 2 3 1692 thymidine kinase [Ruegeria pomeroyi DSS-3] AAV94219.1 22 2 3 3 1693 B12 reduction/reactivation MetH protein [Ruegeria pomeroyi DSS-3] AAV95430.1 25 2 2 2 1694 chain length determinant protein; putative [Ruegeria pomeroyi DSS-3] AAV94145.1 48 2 2 2 1695 ATP-binding cassette domain-containing protein [Ruegeria pomeroyi] WP_011047725.1 66 2 2 4 1696 hypothetical protein SPO1106 [Ruegeria pomeroyi DSS-3] AAV94406.2 21 3 3 2 1697 monovalent cation/H+ antiporter subunit A [Ruegeria pomeroyi] WP_011048593.1 105 3 2 2 1698 thiamine pyrophosphokinase [Ruegeria pomeroyi DSS-3] AAV94610.1 24 2 4 3 1699 RecName: Full=Phosphoribosyl-ATP pyrophosphatase; Short=PRA-PH Q5LUA0.1 11 2 3 4 1700 hypothetical protein SPO1060 [Ruegeria pomeroyi DSS-3] AAV94360.1 48 2 3 3 1701 Esterase-lipase (plasmid) [Ruegeria pomeroyi DSS-3] AHC32567.1 (+1) 25 3 2 2 1702 ABC transporter ATP-binding protein [Ruegeria pomeroyi] WP_011046426.1 30 2 1 2 1703 RecName: Full=4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Short=CMK; AltName: Full=4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase Q5LX98.1 29 3 1 2 1704 MULTISPECIES: MarR family transcriptional regulator [Ruegeria] WP_011046570.1 16 3 2 2 1705 transcriptional regulator; TetR family [Ruegeria pomeroyi DSS-3] AAV97055.1 23 2 4 2 1706 sulfate transporter family protein [Ruegeria pomeroyi DSS-3] AAV96294.1 57 2 3 2 1707 hypothetical protein SPO1068 [Ruegeria pomeroyi DSS-3] AAV94368.1 32 2 2 3 1708 hypothetical protein SPO1281 [Ruegeria pomeroyi DSS-3] AAV94573.1 (+1) 10 2 2 3 1709 SDR family oxidoreductase [Ruegeria pomeroyi] WP_011048122.1 26 2 2 2 1710 hypothetical protein SPO0769 [Ruegeria pomeroyi DSS-3] AAV94074.1 (+1) 36 2 2 2 1711 helix-turn-helix domain-containing protein [Ruegeria pomeroyi] WP_011048658.1 14 2 2 2 1712 ATPase; AFG1 family [Ruegeria pomeroyi DSS-3] AAV97033.1 39 1 1 3 1713 ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV95064.1 29 2 2 2 1714 iron-sulfur cluster assembly scaffold protein [Ruegeria pomeroyi] WP_011047418.1 16 4 2 3 1715 adenylate/guanylate cyclase [Ruegeria pomeroyi DSS-3] AAV94206.1 61 2 1 3 1716 alpha/beta hydrolase [Ruegeria pomeroyi] WP_011047030.1 25 4 2 2 1717 oligopeptide ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV94009.1 36 3 2 1 1718 3-deoxy-D-manno-octulosonic acid transferase [Ruegeria pomeroyi DSS-3] AAV96041.1 47 1 3 4 1719 arginine deiminase family protein [Ruegeria pomeroyi] WP_011241848.1 28 2 4 1 1720 tRNA pseudouridine synthase B [Ruegeria pomeroyi DSS-3] AAV97051.1 33 1 2 3 1721 unnamed protein product [Ruegeria pomeroyi DSS-3] CBG14715.1 66 1 2 5 1722 gentisate 1;2-dioxygenase [Ruegeria pomeroyi DSS-3] AAV96911.1 38 3 1 3 1723 phosphatase; Ppx/GppA family [Ruegeria pomeroyi DSS-3] AAV95138.1 41 1 2 1 1724 molybdopterin-binding protein [Ruegeria pomeroyi] WP_011048341.1 35 2 1 2 1725 pilus assembly protein CpaF [Ruegeria pomeroyi DSS-3] AAV96325.1 53 1 2 1 1726 mechanosensitive ion channel family protein [Ruegeria pomeroyi DSS-3] AAV96663.1 50 2 1 1 1727 unnamed protein product [Ruegeria pomeroyi DSS-3] CAY07143.1 37 1 2 3 1728 YbaK/prolyl-tRNA synthetase domain protein [Ruegeria pomeroyi DSS-3] AAV96477.1 (+1) 21 2 1 1 1729 transcriptional regulator; RpiR family [Ruegeria pomeroyi DSS-3] AAV95105.1 31 1 1 1 1730 DNA-binding response regulator; LuxR family [Ruegeria pomeroyi DSS-3] AAV95823.1 23 3 1 1 1731 phenylacetic acid degradation protein; putative [Ruegeria pomeroyi DSS-3] AAV94057.1 28 1 1 1 1732 ABC transporter permease subunit [Ruegeria pomeroyi] WP_011046880.1 73 1 2 0 1733 alpha/beta fold hydrolase [Ruegeria pomeroyi] WP_011049376.1 29 3 3 0 1734 4-hydroxythreonine-4-phosphate dehydrogenase [Ruegeria pomeroyi DSS-3] AAV95711.1 33 4 0 3 1735 DUF4202 domain-containing protein [Ruegeria pomeroyi] WP_011242101.1 21 4 0 3 1736 acetamidase/formamidase family protein [Ruegeria pomeroyi DSS-3] AAV95113.1 33 0 3 3 1737 phosphoglycerate mutase family protein [Ruegeria pomeroyi DSS-3] AAV95246.1 24 2 3 0 1738 acetyltransferase; GNAT family [Ruegeria pomeroyi DSS-3] AAV95047.1 18 3 0 2 1739 ExsB [Ruegeria pomeroyi DSS-3] AAV96972.1 25 0 3 2 1740 hypothetical protein SPO0881 [Ruegeria pomeroyi DSS-3] AAV94186.1 8 0 2 3 1741 ATP-binding protein [Ruegeria pomeroyi] WP_011048077.1 78 2 0 2 1742 SDR family oxidoreductase [Ruegeria pomeroyi] WP_044028399.1 26 0 1 3 1743 RecName: Full=Large-conductance mechanosensitive channel Q5LMR7.1 15 0 3 3 1744 I78 family peptidase inhibitor [Ruegeria pomeroyi] WP_044028866.1 10 0 2 2 1745 Trk system potassium uptake protein TrkH [Ruegeria pomeroyi DSS-3] AAV95353.1 54 2 2 0 1746 type II 3-dehydroquinate dehydratase [Ruegeria pomeroyi] WP_030003213.1 16 3 3 0 1747 HAD-superfamily hydrolase; subfamily IB (plasmid) [Ruegeria pomeroyi DSS-3] AAV97471.1 25 3 2 0 1748 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC [Ruegeria pomeroyi] WP_011048667.1 10 0 0 2 1749 metallo-beta-lactamase family protein [Ruegeria pomeroyi DSS-3] AAV96214.1 25 2 0 0 1750 unnamed protein product [Ruegeria pomeroyi DSS-3] CBV08930.1 34 0 2 2 1751 AMP-binding enzyme [Ruegeria pomeroyi DSS-3] AAV95789.1 (+1) 56 3 0 0 1752 oxidoreductase; FAD-binding protein [Ruegeria pomeroyi DSS-3] AAV96302.1-DECOY nd 0 1 0 1753 2-hydroxy-3-oxopropionate reductase [Ruegeria pomeroyi DSS-3] AAV95808.1 31 1 0 0 1754 DNA primase [Ruegeria pomeroyi] WP_011047483.1 72 0 2 5 1755 Gfo/Idh/MocA family oxidoreductase [Ruegeria pomeroyi] WP_011047569.1 37 3 3 2 1756 enoyl-CoA hydratase/isomerase family protein [Ruegeria pomeroyi DSS-3] AAV96261.1 28 2 3 2 1757 Lrp/AsnC family transcriptional regulator [Ruegeria pomeroyi] WP_011045991.1 17 3 2 2 1758 RecName: Full=Holo-[acyl-carrier-protein] synthase; Short=Holo-ACP synthase; AltName: Full=4'-phosphopantetheinyl transferase AcpS Q5LNK3.1 17 2 2 3 1759 glycosyl transferase; WecB/TagA/CpsF family [Ruegeria pomeroyi DSS-3] AAV94156.1 27 2 2 2 1760 pH adaption potassium efflux system protein PhaE [Ruegeria pomeroyi DSS-3] AAV96137.1 19 3 3 2 1761 nitronate monooxygenase family protein [Ruegeria pomeroyi] WP_011047695.1 36 3 3 2 1762 aldehyde dehydrogenase family protein [Ruegeria pomeroyi] WP_011048881.1 51 2 3 3 1763 transcriptional regulator; GntR family [Ruegeria pomeroyi DSS-3] AAV95800.1 27 2 3 3 1764 molybdopterin converting factor; subunit 1 [Ruegeria pomeroyi DSS-3] AAV96857.1 9 3 2 2 1765 decarboxylase family protein [Ruegeria pomeroyi DSS-3] AAV95599.1 20 2 2 4 1766 HD domain protein [Ruegeria pomeroyi DSS-3] AAV93586.1 25 2 2 2 1767 hypothetical protein SPO1128 [Ruegeria pomeroyi DSS-3] AAV94428.1 (+1) 30 2 2 3 1768 amidohydrolase domain protein [Ruegeria pomeroyi DSS-3] AAV94260.1 68 2 3 2 1769 IclR family transcriptional regulator [Ruegeria pomeroyi] WP_011048072.1 30 2 3 3 1770 oligopeptide/dipeptide ABC transporter; periplasmic substrate-binding protein [Ruegeria pomeroyi DSS-3] AAV94934.1 60 2 3 2 1771 glycine betaine/proline ABC transporter; periplasmic substrate-binding protein (plasmid) [Ruegeria pomeroyi DSS-3] AAV97365.1 34 2 2 2 1772 C4-dicarboxylate transport transcriptional regulatory protein [Ruegeria pomeroyi DSS-3] AAV95874.1 43 2 2 4 1773 beta-lactamase [Ruegeria pomeroyi DSS-3] AAV95236.1 44 2 2 2 1774 hypothetical protein SPO0951 [Ruegeria pomeroyi DSS-3] AAV94256.1 27 2 2 2 1775 hypothetical protein [Ruegeria pomeroyi] WP_011049352.1 17 3 3 2 1776 unnamed protein product [Ruegeria pomeroyi DSS-3] CBG20392.1 52 2 2 2 1777 AAA family ATPase [Ruegeria pomeroyi] WP_011241865.1 68 2 4 2 1778 extradiol ring-cleavage dioxygenase family protein [Ruegeria pomeroyi DSS-3] AAV96909.1 37 2 2 2 1779 DNA-binding response regulator (plasmid) [Ruegeria pomeroyi DSS-3] AAV97489.1 27 2 2 2 1780 YaiI/YqxD family protein [Ruegeria pomeroyi] WP_011049498.1 16 2 2 3 1781 feruloyl-CoA synthase [Ruegeria pomeroyi] WP_051420405.1 64 2 2 4 1782 hypothetical protein SPOA0272a (plasmid) [Ruegeria pomeroyi DSS-3] AHC32568.1 19 2 2 2 1783 DUF6324 family protein [Ruegeria pomeroyi] WP_044028177.1 7 2 3 2 1784 (2R)-3-sulfolactate dehydrogenase [Ruegeria pomeroyi DSS-3] AAV96422.1 34 1 2 2 1785 acyl-CoA dehydrogenase family protein (plasmid) [Ruegeria pomeroyi DSS-3] AAV97535.1 41 1 3 2 1786 4a-hydroxytetrahydrobiopterin dehydratase [Ruegeria pomeroyi DSS-3] AAV96954.1 11 2 3 2 1787 precorrin-3B C(17)-methyltransferase [Ruegeria pomeroyi] WP_011048567.1 27 2 3 2 1788 type 1 glutamine amidotransferase [Ruegeria pomeroyi] WP_011047040.1 25 2 3 2 1789 beta-hydroxyaspartate aldolase (plasmid) [Ruegeria pomeroyi DSS-3] AAV97282.1 42 3 2 2 1790 adenosylcobinamide-phosphate synthase CbiB [Ruegeria pomeroyi] WP_011048915.1 33 1 2 2 1791 VWA domain-containing protein [Ruegeria pomeroyi] WP_011048222.1 46 2 1 1 1792 cobyric acid synthase CobQ [Ruegeria pomeroyi DSS-3] AAV94535.1 52 1 3 2 1793 MoxR family ATPase [Ruegeria pomeroyi] WP_011048348.1 33 2 2 1 1794 hypothetical protein SPO1739 [Ruegeria pomeroyi DSS-3] AAV95019.1 21 2 2 1 1795 sensor histidine kinase [Ruegeria pomeroyi] WP_011045957.1 50 1 3 1 1796 transcriptional regulator; LysR family [Ruegeria pomeroyi DSS-3] AAV96202.1 32 1 2 2 1797 dipeptide ABC transporter ATP-binding protein [Ruegeria pomeroyi] WP_011045871.1 58 1 2 3 1798 RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA Q5LNT7.1 23 3 1 2 1799 SRPBCC domain-containing protein [Ruegeria pomeroyi] WP_011049034.1 16 3 3 1 1800 acetoacetyl-CoA synthase [Ruegeria pomeroyi DSS-3] AAV95235.1 (+1) 71 4 1 2 1801 selenide;water dikinase; putative [Ruegeria pomeroyi DSS-3] AAV96140.1 74 1 1 1 1802 ligase-associated DNA damage response DEXH box helicase [Ruegeria pomeroyi] WP_011048791.1 89 1 1 2 1803 hypothetical protein SPO1629 [Ruegeria pomeroyi DSS-3] AAV94916.1 (+1) 45 2 1 1 1804 acetyltransferase; GNAT family [Ruegeria pomeroyi DSS-3] AAV96483.1 20 2 1 1 1805 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Ruegeria pomeroyi] WP_011049566.1 45 5 2 0 1806 hypothetical protein SPO0407 [Ruegeria pomeroyi DSS-3] AAV93725.1 29 0 2 1 1807 hypothetical protein SPO0296 [Ruegeria pomeroyi DSS-3] AAV93614.1 20 3 2 0 1808 cytochrome P450 family protein [Ruegeria pomeroyi DSS-3] AAV94909.1 (+1) 48 0 1 2 1809 hypothetical protein SPO0140 [Ruegeria pomeroyi DSS-3] AAV93468.1 21 0 3 0 1810 LLM class flavin-dependent oxidoreductase [Ruegeria pomeroyi] WP_011048409.1 39 0 3 3 1811 LAO/AO transport system ATPase [Ruegeria pomeroyi DSS-3] AAV94277.1 35 2 3 0 1812 amidohydrolase [Ruegeria pomeroyi] WP_011047827.1 40 2 0 3 1813 haloacid dehalogenase; type II; putative [Ruegeria pomeroyi DSS-3] AAV95727.1 (+1) 27 3 3 0 1814 4-coumarate:CoA ligase [Ruegeria pomeroyi DSS-3] AAV94106.1 (+1) 57 2 0 2 1815 hydantoinase/oxoprolinase family protein [Ruegeria pomeroyi DSS-3] AAV96960.1 70 4 0 2 1816 P1 family peptidase [Ruegeria pomeroyi] WP_011045900.1 34 4 0 2 1817 MULTISPECIES: exodeoxyribonuclease VII small subunit [Ruegeria] WP_044027791.1 9 0 3 3 1818 SDR family oxidoreductase [Ruegeria pomeroyi] WP_011048136.1 25 2 2 0 1819 hypothetical protein SPO2693 [Ruegeria pomeroyi DSS-3] AAV95938.1 37 0 2 2 1820 cell division protein FtsW [Ruegeria pomeroyi DSS-3] AAV94490.1 44 0 2 2 1821 TetR/AcrR family transcriptional regulator [Ruegeria pomeroyi] WP_011049089.1 21 0 3 3 1822 twin-arginine translocation protein; TatA/E family [Ruegeria pomeroyi DSS-3] AAV95928.1 7 0 2 2 1823 HAD-superfamily hydrolase; subfamily IA; variant 1 family protein [Ruegeria pomeroyi DSS-3] AAV97036.1 24 0 2 2 1824 molecular chaperone DjiA [Ruegeria pomeroyi] WP_011046855.1 25 1 0 3 1825 monofunctional biosynthetic peptidoglycan transglycosylase [Ruegeria pomeroyi] WP_011049445.1 27 1 0 0 1826 hypothetical protein [Ruegeria pomeroyi] WP_044028080.1 7 0 2 0 1827 voltage-gated chloride channel family protein [Ruegeria pomeroyi DSS-3] AAV94504.1 (+1) 61 2 1 0 1828 FtsK/SpoIIIE family protein [Ruegeria pomeroyi DSS-3] AAV96642.1-DECOY nd 0 1 0 1829 transcriptional regulator; DeoR family [Ruegeria pomeroyi DSS-3] AAV94013.1 31 2 0 3 1830 methylated-DNA--[protein]-cysteine S-methyltransferase [Ruegeria pomeroyi] WP_011048824.1 16 0 2 2 1831 hypothetical protein [Ruegeria pomeroyi] WP_011046813.1 28 0 3 3 1832 Aminotransferase [Ruegeria pomeroyi DSS-3] AHB86023.1 (+1) 36 3 2 2 1833 bifunctional riboflavin kinase/FAD synthetase [Ruegeria pomeroyi] WP_011048844.1 34 2 3 2 1834 metallo-beta-lactamase family protein [Ruegeria pomeroyi DSS-3] AAV95441.1 32 2 2 3 1835 hypothetical protein [Ruegeria pomeroyi] WP_011048228.1 28 2 2 3 1836 RecName: Full=Tryptophan 2;3-dioxygenase; Short=TDO; AltName: Full=Tryptamin 2;3-dioxygenase; AltName: Full=Tryptophan oxygenase; Short=TO; Short=TRPO; AltName: Full=Tryptophan pyrrolase; AltName: Full=Tryptophanase Q5LKH2.1 (+1) 32 2 2 3 1837 PAS-domain containing protein [Ruegeria pomeroyi] WP_011049539.1 55 2 2 2 1838 type II secretion system protein GspF [Ruegeria pomeroyi DSS-3] AAV96326.1 36 2 2 2 1839 hypothetical protein SPO2691 [Ruegeria pomeroyi DSS-3] AAV95936.1 40 2 2 2 1840 glutaredoxin [Ruegeria pomeroyi DSS-3] AAV93401.1 10 3 2 2 1841 hydroxyphenylacetyl-CoA thioesterase PaaI [Ruegeria pomeroyi] WP_011046490.1 15 2 3 2 1842 hypothetical protein SPO2184 [Ruegeria pomeroyi DSS-3] AAV95450.1 38 2 2 2 1843 ABC transporter substrate-binding protein [Ruegeria pomeroyi] WP_011046769.1 47 2 2 2 1844 DNA-binding protein; putative [Ruegeria pomeroyi DSS-3] AAV96540.1 20 2 2 2 1845 Hsp20 family protein [Ruegeria pomeroyi] WP_011046644.1 15 3 2 2 1846 transcriptional regulator; AraC family [Ruegeria pomeroyi DSS-3] AAV96839.1 31 2 2 2 1847 GumN family protein [Ruegeria pomeroyi DSS-3] AAV96381.1 (+1) 37 2 2 2 1848 response regulator transcription factor [Ruegeria pomeroyi] WP_011048085.1 24 2 2 2 1849 hypothetical protein [Ruegeria pomeroyi] WP_011048478.1 15 2 2 2 1850 glutathione S-transferase family protein [Ruegeria pomeroyi] WP_011048602.1 23 2 2 2 1851 P1 family peptidase [Ruegeria pomeroyi] WP_011048825.1 33 2 2 2 1852 molybdopterin-binding protein [Ruegeria pomeroyi] WP_011046071.1 44 2 2 3 1853 FAD-dependent oxidoreductase (plasmid) [Ruegeria pomeroyi DSS-3] AAV97203.1 89 2 2 2 1854 hypothetical protein SPO0899 [Ruegeria pomeroyi DSS-3] AAV94204.1 (+1) 43 2 1 2 1855 ErfK/YbiS/YcfS/YnhG family protein [Ruegeria pomeroyi DSS-3] AAV95471.1 (+1) 24 2 2 2 1856 hypothetical protein SPO0348 [Ruegeria pomeroyi DSS-3] AAV93666.1 42 3 1 2 1857 TRAP transporter substrate-binding protein DctP [Ruegeria pomeroyi] WP_011242059.1 35 2 1 3 1858 efflux RND transporter permease subunit [Ruegeria pomeroyi] WP_011046054.1 122 3 3 1 1859 glutamine amidotransferases class-II domain protein [Ruegeria pomeroyi DSS-3] AAV95301.1 29 2 1 3 1860 hypothetical protein SPO1735 [Ruegeria pomeroyi DSS-3] AAV95015.1 12 1 1 1 1861 RecName: Full=Histidine ammonia-lyase; Short=Histidase Q5LRD8.1 54 1 3 2 1862 oxidoreductase; short chain dehydrogenase/reductase family [Ruegeria pomeroyi DSS-3] AAV94734.1 47 1 1 2 1863 universal stress protein [Ruegeria pomeroyi] WP_011046224.1 15 1 2 2 1864 transcriptional regulator; GntR family [Ruegeria pomeroyi DSS-3] AAV94067.1 24 3 1 2 1865 glutamate-1-semialdehyde 2;1-aminomutase [Ruegeria pomeroyi DSS-3] AAV94884.1 45 1 2 2 1866 peptide deformylase [Ruegeria pomeroyi DSS-3] AAV96453.1 18 2 2 1 1867 ATP-binding cassette domain-containing protein [Ruegeria pomeroyi] WP_011046452.1 36 1 3 2 1868 MaoC domain protein [Ruegeria pomeroyi DSS-3] AAV96387.1 18 2 1 2 1869 NADH-quinone oxidoreductase subunit J [Ruegeria pomeroyi] WP_011048466.1 22 1 1 2 1870 arsenate reductase (plasmid) [Ruegeria pomeroyi DSS-3] AAV97213.1 (+1) 18 1 1 1 1871 putative protein TIGR00051 [Ruegeria pomeroyi DSS-3] AAV96348.1 14 3 2 0 1872 ectoine hydrolase [Ruegeria pomeroyi DSS-3] AAV94440.1 45 2 3 0 1873 trimethylamine methyltransferase family protein [Ruegeria pomeroyi] WP_011045936.1 57 2 2 0 1874 RecName: Full=tRNA dimethylallyltransferase; AltName: Full=Dimethylallyl diphosphate:tRNA dimethylallyltransferase; Short=DMAPP:tRNA dimethylallyltransferase; Short=DMATase; AltName: Full=Isopentenyl-diphosphate:tRNA isopentenyltransferase; Short=IPP transferase; Short=IPPT; Short=IPTase Q5LSV5.1 32 0 2 2 1875 DNA-binding protein; putative [Ruegeria pomeroyi DSS-3] AAV94390.1 52 2 0 2 1876 DUF374 domain-containing protein [Ruegeria pomeroyi] WP_011046479.1 26 3 0 2 1877 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase [Ruegeria pomeroyi] WP_011241811.1 55 2 0 2 1878 cobalamin biosynthetic protein CobC [Ruegeria pomeroyi DSS-3] AAV96459.1 35 0 2 2 1879 hemolysin (plasmid) [Ruegeria pomeroyi DSS-3] AAV97150.1 32 1 0 4 1880 capsular polysaccharide export protein KpsS [Ruegeria pomeroyi DSS-3] AAV95037.1 49 1 0 1 1881 ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV94782.1 26 3 0 2 1882 maoC family protein/phosphate acetyl/butaryl transferase [Ruegeria pomeroyi DSS-3] AAV93445.1 50 0 3 3 1883 hypothetical protein SPO1220 [Ruegeria pomeroyi DSS-3] AAV94515.1 13 3 3 0 1884 hypothetical protein SPO1444 [Ruegeria pomeroyi DSS-3] AAV94731.1 36 3 0 3 1885 phosphodiesterase [Ruegeria pomeroyi] WP_011046919.1 29 0 2 3 1886 HTH-type transcriptional regulator BetI [Ruegeria pomeroyi DSS-3] AAV94382.1 21 0 2 4 1887 murein transglycosylase A [Ruegeria pomeroyi] WP_011049556.1 38 2 3 0 1888 hypothetical protein SPO3607 [Ruegeria pomeroyi DSS-3] AAV96831.2 36 4 2 0 1889 AMP-binding protein [Ruegeria pomeroyi] WP_044028087.1 58 2 0 2 1890 thioesterase family protein [Ruegeria pomeroyi DSS-3] AAV94973.1 16 2 0 2 1891 putative protein TIGR01620 [Ruegeria pomeroyi DSS-3] AAV96375.1 36 3 2 0 1892 D-2-hydroxyacid dehydrogenase [Ruegeria pomeroyi] WP_011047435.1 35 3 2 0 1893 hypothetical protein SPO0641 [Ruegeria pomeroyi DSS-3] AAV93948.1 23 2 2 0 1894 SsrA-binding protein SmpB [Ruegeria pomeroyi] WP_011049478.1 18 0 2 3 1895 heme ABC transporter permease CcmC [Ruegeria pomeroyi] WP_011048032.1 29 2 0 2 1896 hypothetical protein SPO3452a [Ruegeria pomeroyi DSS-3] AHB86032.1 18 1 2 0 1897 oxidoreductase; short chain dehydrogenase/reductase family [Ruegeria pomeroyi DSS-3] AAV94732.1 25 2 0 1 1898 RecName: Full=Putative pre-16S rRNA nuclease Q5LQY2.1 17 0 2 1 1899 hypothetical protein SPO0907 [Ruegeria pomeroyi DSS-3] AAV94212.1 38 0 2 2 1900 aldehyde dehydrogenase family protein (plasmid) [Ruegeria pomeroyi DSS-3] AAV97377.1 52 1 2 0 1901 FMN-binding negative transcriptional regulator [Ruegeria pomeroyi] WP_011046031.1 22 0 1 2 1902 ABC transporter ATP-binding protein [Ruegeria pomeroyi] WP_011049518.1 34 1 0 0 1903 N-formylglutamate amidohydrolase family protein [Ruegeria pomeroyi DSS-3] AAV95849.1 28 1 0 2 1904 sarcosine oxidase subunit alpha family protein [Ruegeria pomeroyi] WP_011047480.1-DECOY nd 1 1 0 1905 no change [Ruegeria pomeroyi DSS-3] AAV95308.1 83 1 0 2 1906 nitroreductase [Ruegeria pomeroyi] WP_030003248.1 24 0 3 2 1907 DNA binding protein; putative [Ruegeria pomeroyi DSS-3] AAV93469.1 20 0 2 0 1908 YGGT family protein [Ruegeria pomeroyi DSS-3] AAV93450.1 11 4 0 0 1909 rhodanese domain protein [Ruegeria pomeroyi DSS-3] AAV94719.1 15 0 0 3 1910 transcriptional regulator; TetR family [Ruegeria pomeroyi DSS-3] AAV93890.1 23 0 1 0 1911 oligopeptide ABC transporter; permease protein [Ruegeria pomeroyi DSS-3] AAV93874.1 43 0 3 0 1912 glyoxalase family protein [Ruegeria pomeroyi DSS-3] AAV94907.1 (+1) 20 2 0 0 1913 hypothetical protein SPO3454 [Ruegeria pomeroyi DSS-3] AAV96680.1 25 0 1 0 1914 spermidine/putrescine ABC transporter; periplasmic substrate-binding protein [Ruegeria pomeroyi DSS-3] AAV95282.1 42 2 0 4 1915 hypothetical protein SPO1016 [Ruegeria pomeroyi DSS-3] AAV94320.1 (+1) 37 1 3 0 1916 hypothetical protein [Ruegeria pomeroyi] WP_044028149.1 12 1 2 0 1917 ABC transporter; permease protein [Ruegeria pomeroyi DSS-3] AAV97029.1-DECOY (+1) nd 1 0 0 1918 hypothetical protein SPO2298 [Ruegeria pomeroyi DSS-3] AAV95560.1 27 0 1 1 1919 RecName: Full=Error-prone DNA polymerase Q5LVN0.1 123 2 0 0 1920 hypothetical protein [Ruegeria pomeroyi] WP_144083971.1 30 0 1 0 1921 TIGR04282 family arsenosugar biosynthesis glycosyltransferase [Ruegeria pomeroyi] WP_011049014.1 22 1 1 0 1922 excinuclease ABC subunit UvrC [Ruegeria pomeroyi] WP_011049316.1 69 0 3 2 1923 VWA domain-containing protein [Ruegeria pomeroyi] WP_011048346.1 47 2 2 2 1924 trkA domain protein [Ruegeria pomeroyi DSS-3] AAV96193.1 63 2 2 2 1925 DNA-3-methyladenine glycosylase I [Ruegeria pomeroyi] WP_011046876.1 24 1 2 2 1926 DUF4147 domain-containing protein [Ruegeria pomeroyi] WP_011048689.1 37 2 2 2 1927 hypothetical protein SPO1671 [Ruegeria pomeroyi DSS-3] AAV94956.1 21 2 2 2 1928 TRAP dicarboxylate transporter; DctP subunit [Ruegeria pomeroyi DSS-3] AAV94043.1 36 2 2 2 1929 hypothetical protein SPO0982 [Ruegeria pomeroyi DSS-3] AAV94286.1 (+1) 45 2 2 2 1930 branched-chain amino acid ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV96927.1 27 2 2 2 1931 class II aldolase/adducin N-terminal domain protein [Ruegeria pomeroyi DSS-3] AAV96970.1 28 2 2 2 1932 BCCT family transporter [Ruegeria pomeroyi] WP_011048876.1 65 2 2 2 1933 hypothetical protein [Ruegeria pomeroyi] WP_011049306.1 18 2 2 2 1934 hypothetical protein SPO0315 [Ruegeria pomeroyi DSS-3] AAV93633.1 11 2 2 2 1935 hypothetical protein SPO2519 [Ruegeria pomeroyi DSS-3] AAV95769.1 20 2 2 2 1936 TIGR03084 family metal-binding protein [Ruegeria pomeroyi] WP_011046337.1 29 3 1 2 1937 ATP-binding cassette domain-containing protein [Ruegeria pomeroyi] WP_044027943.1 25 2 1 2 1938 oxidoreductase; FAD-binding protein [Ruegeria pomeroyi DSS-3] AAV93882.1 47 1 2 1 1939 allantoinase PuuE [Ruegeria pomeroyi] WP_011046621.1 53 1 1 2 1940 penicillin-binding protein 1C [Ruegeria pomeroyi] WP_084791029.1 72 1 1 1 1941 RecName: Full=Protein translocase subunit SecA 2 Q5LPY3.1 71 1 1 1 1942 hypothetical protein SPO0456 [Ruegeria pomeroyi DSS-3] AAV93774.2 (+1) 12 2 1 1 1943 FtsX-like permease family protein [Ruegeria pomeroyi] WP_011046194.1 87 2 1 2 1944 oxidoreductase; FAD-binding protein [Ruegeria pomeroyi DSS-3] AAV93942.1 50 1 1 2 1945 fumarylacetoacetate hydrolase family protein [Ruegeria pomeroyi] WP_011048128.1 40 2 1 2 1946 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Ruegeria pomeroyi DSS-3] AAV93769.1 53 1 1 3 1947 FAD-binding oxidoreductase [Ruegeria pomeroyi] WP_011046189.1 48 2 1 2 1948 hypothetical protein SPOA0352 (plasmid) [Ruegeria pomeroyi DSS-3] AAV97484.1 48 1 2 1 1949 2OG-Fe(II) oxygenase family protein [Ruegeria pomeroyi] WP_030003170.1 23 2 2 0 1950 CAIB/BAIF family protein [Ruegeria pomeroyi DSS-3] AAV96870.1 38 1 1 0 1951 hypothetical protein [Ruegeria pomeroyi] WP_011048070.1 29 2 0 2 1952 membrane dipeptidase [Ruegeria pomeroyi] WP_011047050.1 37 2 0 2 1953 branched-chain amino acid ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV96517.1 31 2 2 0 1954 hypothetical protein SPO1236 [Ruegeria pomeroyi DSS-3] AAV94530.1 51 2 1 0 1955 DNA-binding response regulator; LysR family [Ruegeria pomeroyi DSS-3] AAV96273.1 29 2 3 0 1956 1-acyl-sn-glycerol-3-phosphate acyltransferase [Ruegeria pomeroyi] WP_011047710.1 31 2 1 0 1957 NADPH:quinone reductase [Ruegeria pomeroyi] WP_011046372.1 34 1 0 2 1958 ABC transporter permease [Ruegeria pomeroyi] WP_011049215.1 41 1 0 1 1959 oxidoreductase; GMC family [Ruegeria pomeroyi DSS-3] AAV94275.1 58 1 0 1 1960 Fe-S metabolism associated family protein [Ruegeria pomeroyi DSS-3] AAV95433.1 15 0 0 2 1961 mercuric reductase; putative [Ruegeria pomeroyi DSS-3] AAV93857.1 50 2 0 3 1962 transcriptional regulator; MarR family [Ruegeria pomeroyi DSS-3] AAV94672.1 17 0 2 3 1963 sulfatase-like hydrolase/transferase [Ruegeria pomeroyi] WP_011046549.1 52 2 0 1 1964 RecName: Full=Probable nicotinate-nucleotide adenylyltransferase; AltName: Full=Deamido-NAD(+) diphosphorylase; AltName: Full=Deamido-NAD(+) pyrophosphorylase; AltName: Full=Nicotinate mononucleotide adenylyltransferase; Short=NaMN adenylyltransferase Q5LW93.1 24 0 3 2 1965 TetR/AcrR family transcriptional regulator [Ruegeria pomeroyi] WP_011242200.1 21 0 2 3 1966 ATPase; putative [Ruegeria pomeroyi DSS-3] AAV94019.1 (+1) 31 3 2 0 1967 trypsin-like peptidase domain-containing protein [Ruegeria pomeroyi] WP_044029530.1 54 3 0 2 1968 hypothetical protein SPO0549 [Ruegeria pomeroyi DSS-3] AAV93865.1 (+1) 18 0 3 2 1969 SH3 domain-containing protein [Ruegeria pomeroyi] WP_011045813.1 21 0 3 2 1970 putative protein TIGR00275 [Ruegeria pomeroyi DSS-3] AAV94484.1 (+1) 44 2 0 3 1971 hypothetical protein [Ruegeria pomeroyi] WP_144083962.1 18 2 0 2 1972 MarR family transcriptional regulator [Ruegeria pomeroyi] WP_011047190.1 17 0 2 2 1973 hypothetical protein SPO2075 [Ruegeria pomeroyi DSS-3] AAV95346.1 20 0 2 2 1974 GNAT family N-acetyltransferase [Ruegeria pomeroyi] WP_011049410.1 44 0 2 2 1975 MFS transporter [Ruegeria pomeroyi] WP_011045894.1 49 2 0 2 1976 hypothetical protein [Ruegeria pomeroyi] WP_011048470.1 8 2 0 3 1977 FHA domain-containing protein [Ruegeria pomeroyi] WP_011046810.1 29 0 3 2 1978 enoyl-CoA hydratase/isomerase family protein [Ruegeria pomeroyi DSS-3] AAV95478.1 38 0 1 2 1979 oligopeptide/dipeptide ABC transporter; permease protein [Ruegeria pomeroyi DSS-3] AAV94942.1 44 0 2 1 1980 serine/threonine protein phosphatase [Ruegeria pomeroyi] WP_011049041.1 27 2 1 0 1981 hypothetical protein SPO1977 [Ruegeria pomeroyi DSS-3] AAV95253.1 38 0 1 3 1982 DUF1489 domain-containing protein [Ruegeria pomeroyi] WP_011048883.1 16 1 2 0 1983 Hsp20 family protein [Ruegeria pomeroyi] WP_011049167.1 17 1 1 0 1984 1;2-phenylacetyl-CoA epoxidase subunit A [Ruegeria pomeroyi] WP_011046506.1 38 1 2 0 1985 Crp/Fnr family transcriptional regulator [Ruegeria pomeroyi] WP_011242100.1 26 3 0 0 1986 hypothetical protein SPO1775 [Ruegeria pomeroyi DSS-3] AAV95054.1 26 0 2 0 1987 hypothetical protein SPO0015 [Ruegeria pomeroyi DSS-3] AAV93346.1 29 3 0 0 1988 MarR family transcriptional regulator [Ruegeria pomeroyi] WP_011241891.1 17 0 0 2 1989 hypothetical protein SPO2598 [Ruegeria pomeroyi DSS-3] AAV95846.1 (+1) 37 1 0 2 1990 hypothetical protein SPO2950 [Ruegeria pomeroyi DSS-3] AAV96191.1 43 2 0 0 1991 isoprenylcysteine carboxylmethyltransferase family protein [Ruegeria pomeroyi] WP_011048521.1 17 0 2 0 1992 MULTISPECIES: cytochrome-c oxidase; cbb3-type subunit II [Ruegeria] WP_011049205.1 27 2 0 0 1993 acyl-CoA thioesterase [Ruegeria pomeroyi] WP_030003167.1 14 1 0 0 1994 transcriptional regulator PecS [Ruegeria pomeroyi DSS-3] AAV96808.1 18 0 1 0 1995 endopeptidase La [Ruegeria pomeroyi] WP_011048315.1-DECOY nd 0 1 0 1996 molybdopterin-guanine dinucleotide biosynthesis protein B [Ruegeria pomeroyi] WP_011046069.1 18 3 0 2 1997 LysR family transcriptional regulator [Ruegeria pomeroyi] WP_011046857.1 33 0 1 1 1998 lytic transglycosylase domain-containing protein [Ruegeria pomeroyi] WP_011047375.1 22 0 0 1 1999 molybdopterin biosynthesis protein MoeB; putative [Ruegeria pomeroyi DSS-3] AAV93728.1 37 0 1 1 2000 phosphopentomutase [Ruegeria pomeroyi DSS-3] AAV96169.1 43 2 0 4 2001 biotin--acetyl-CoA-carboxylase ligase [Ruegeria pomeroyi DSS-3] AAV96003.1 26 2 1 0 2002 cytochrome P450 family protein [Ruegeria pomeroyi DSS-3] AAV95176.1 52 2 2 0 2003 tRNA(Ile)-lysidine synthase [Ruegeria pomeroyi DSS-3] AAV96341.1 45 1 0 3 2004 glutathione S-transferase [Ruegeria pomeroyi] WP_030003165.1 31 3 0 3 2005 Polyketide cyclase [Ruegeria pomeroyi DSS-3] AHB86027.1 20 1 0 0 2006 YjeF family protein [Ruegeria pomeroyi DSS-3] AAV95556.1 59 1 2 2 2007 transcriptional regulator; LysR family [Ruegeria pomeroyi DSS-3] AAV94828.1 34 2 1 1 2008 AMP-binding enzyme [Ruegeria pomeroyi DSS-3] AAV95126.1 70 2 1 2 2009 hypothetical protein SPO2229 [Ruegeria pomeroyi DSS-3] AAV95495.1 31 2 2 1 2010 adenosine deaminase [Ruegeria pomeroyi] WP_011048627.1 36 1 2 2 2011 hypothetical protein SPO2227 [Ruegeria pomeroyi DSS-3] AAV95493.1 119 1 1 3 2012 sarcosine oxidase; beta subunit family [Ruegeria pomeroyi DSS-3] AAV95024.1 46 1 1 1 2013 fatty acid desaturase family protein [Ruegeria pomeroyi DSS-3] AAV96675.1 44 2 2 0 2014 ribonuclease T2 [Ruegeria pomeroyi] WP_011049247.1 23 2 2 0 2015 low molecular weight phosphotyrosine protein phosphatase [Ruegeria pomeroyi DSS-3] AAV94283.1 16 1 1 0 2016 methyltransferase; FkbM family [Ruegeria pomeroyi DSS-3] AAV96611.1 24 0 2 2 2017 sugar ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV93924.1 38 0 2 2 2018 NAD-dependent epimerase/dehydratase family protein [Ruegeria pomeroyi] WP_011046601.1 75 0 1 3 2019 aspartate/glutamate leucyltransferase [Ruegeria pomeroyi DSS-3] AAV95817.1 32 2 1 0 2020 tRNA pseudouridine synthase A [Ruegeria pomeroyi DSS-3] AAV96378.1 29 1 0 2 2021 hypothetical protein SPO0845 [Ruegeria pomeroyi DSS-3] AAV94150.1 35 1 0 1 2022 RtcB family protein [Ruegeria pomeroyi] WP_011045929.1 51 1 0 2 2023 2-nitropropane dioxygenase (plasmid) [Ruegeria pomeroyi DSS-3] AAV97457.1 37 1 1 0 2024 hypothetical protein [Ruegeria pomeroyi] WP_011049245.1 14 0 1 1 2025 AMP-binding protein [Ruegeria pomeroyi] WP_011046527.1 52 0 2 0 2026 tRNA (guanosine(37)-N1)-methyltransferase TrmD [Ruegeria pomeroyi] WP_044028687.1 29 0 2 0 2027 acetyltransferase; GNAT family [Ruegeria pomeroyi DSS-3] AAV96485.1 19 1 0 0 2028 hydroxyectoine utilization dehydratase EutB [Ruegeria pomeroyi] WP_011046889.1 35 0 0 2 2029 MarR family transcriptional regulator [Ruegeria pomeroyi] WP_011046014.1 19 2 2 0 2030 type I secretion target repeat protein [Ruegeria pomeroyi DSS-3] AAV95961.1-DECOY nd 1 0 0 2031 segregation and condensation protein A [Ruegeria pomeroyi DSS-3] AAV95751.1 (+1) 32 0 2 2 2032 transcriptional regulator; TetR family [Ruegeria pomeroyi DSS-3] AAV95008.1 22 0 2 2 2033 DNA-binding/shikimate kinase domain protein [Ruegeria pomeroyi DSS-3] AAV96925.1 33 0 2 2 2034 unnamed protein product [Ruegeria pomeroyi DSS-3] CBV32963.1 27 0 2 2 2035 phenylacetate-CoA oxygenase/reductase subunit PaaK [Ruegeria pomeroyi] WP_011046502.1 39 0 2 2 2036 RDD family protein [Ruegeria pomeroyi DSS-3] AAV95816.1 16 2 0 2 2037 pyridoxamine 5'-phosphate oxidase family protein [Ruegeria pomeroyi DSS-3] AAV96821.1 22 2 0 2 2038 N-formylglutamate amidohydrolase [Ruegeria pomeroyi] WP_011049281.1 27 2 0 2 2039 precorrin-6A synthase [Ruegeria pomeroyi DSS-3] AAV96115.1 27 2 2 0 2040 hypothetical protein SPO2935 [Ruegeria pomeroyi DSS-3] AAV96176.1 16 2 2 0 2041 MbcA/ParS/Xre antitoxin family protein [Ruegeria pomeroyi] WP_011241922.1 13 2 2 0 2042 TIGR02281 family clan AA aspartic protease [Ruegeria pomeroyi] WP_011048158.1 21 2 0 2 2043 hypothetical protein SPO0138 [Ruegeria pomeroyi DSS-3] AAV93466.1 33 0 2 2 2044 N-methylglutamate synthase subunit C [Ruegeria pomeroyi DSS-3] AAV94861.1 48 0 2 2 2045 oxygen-independent coproporphyrinogen III oxidase; putative [Ruegeria pomeroyi DSS-3] AAV93337.1 43 0 1 1 2046 PqiC family protein [Ruegeria pomeroyi] WP_011046991.1 20 2 2 0 2047 methyltransferase domain-containing protein [Ruegeria pomeroyi] WP_011046082.1 27 1 1 0 2048 hypothetical protein SPO2073 [Ruegeria pomeroyi DSS-3] AAV95344.1 25 1 2 0 2049 hypothetical protein SPO0551 [Ruegeria pomeroyi DSS-3] AAV93867.1 40 2 1 0 2050 acetyl-CoA carboxylase; biotin carboxylase; putative [Ruegeria pomeroyi DSS-3] AAV93894.1 69 1 2 0 2051 adenylate/guanylate cyclase [Ruegeria pomeroyi DSS-3] AAV93887.1 62 1 1 0 2052 hypothetical protein SPO2021 [Ruegeria pomeroyi DSS-3] AAV95294.1 11 0 1 1 2053 RecName: Full=Protein-methionine-sulfoxide reductase catalytic subunit MsrP; Flags: Precursor Q5LNE0.1 34 0 1 2 2054 response regulator transcription factor [Ruegeria pomeroyi] WP_011047303.1 22 1 0 1 2055 salicylyl-CoA 5-hydroxylase (plasmid) [Ruegeria pomeroyi DSS-3] AAV97579.1 85 1 2 0 2056 trimethylamine methyltransferase family protein [Ruegeria pomeroyi] WP_011047858.1 55 1 0 3 2057 hypothetical protein SPO1897 [Ruegeria pomeroyi DSS-3] AAV95175.1 45 0 1 1 2058 hypothetical protein SPO3710 [Ruegeria pomeroyi DSS-3] AAV96931.1 42 2 0 0 2059 decarboxylase; pyridoxal-dependent [Ruegeria pomeroyi DSS-3] AAV96908.1 53 0 3 0 2060 LysR family transcriptional regulator [Ruegeria pomeroyi] WP_011242121.1 34 0 3 0 2061 transcriptional regulator; AraC family [Ruegeria pomeroyi DSS-3] AAV93578.1 36 0 0 3 2062 Crp/Fnr family transcriptional regulator [Ruegeria pomeroyi] WP_011047074.1 24 0 3 0 2063 ParA family protein [Ruegeria pomeroyi DSS-3] AAV93779.1 22 0 3 0 2064 hypothetical protein SPOA0083 (plasmid) [Ruegeria pomeroyi DSS-3] AAV97221.1 42 2 0 0 2065 transcriptional regulator; LysR family [Ruegeria pomeroyi DSS-3] AAV93566.1 34 0 0 2 2066 transcriptional regulator; LysR family [Ruegeria pomeroyi DSS-3] AAV95369.1 (+1) 31 2 0 0 2067 microcystin dependent protein; putative [Ruegeria pomeroyi DSS-3] AAV93800.1 22 2 0 0 2068 UDP-3-0-acyl N-acetylglucosamine deacetylase [Ruegeria pomeroyi DSS-3] AAV94501.1 33 1 0 0 2069 aldehyde dehydrogenase (NADP(+)) [Ruegeria pomeroyi] WP_011242039.1 52 0 1 0 2070 MAPEG family protein [Ruegeria pomeroyi] WP_011048983.1 14 1 0 0 2071 histidine phosphatase family protein [Ruegeria pomeroyi] WP_011048988.1 24 1 1 0 2072 FG-GAP repeat domain protein [Ruegeria pomeroyi DSS-3] AAV94164.1 55 0 2 0 2073 ABC transporter ATP-binding protein/permease [Ruegeria pomeroyi] WP_011045799.1 68 0 0 2 2074 iminosuccinate reductase (plasmid) [Ruegeria pomeroyi DSS-3] AAV97283.1 (+1) 31 0 2 0 2075 hypothetical protein SPO2058 [Ruegeria pomeroyi DSS-3] AAV95329.1 (+1) 28 0 0 1 2076 ion transporter [Ruegeria pomeroyi] WP_011045802.1 29 0 0 2 2077 DUF4142 domain-containing protein [Ruegeria pomeroyi] WP_011046019.1 18 0 2 2 2078 lipoprotein; putative [Ruegeria pomeroyi DSS-3] AAV95730.1 11 0 1 0 2079 hypothetical protein SPO2513 [Ruegeria pomeroyi DSS-3] AAV95763.1 52 0 1 0 2080 hypoxanthine phosphoribosyltransferase [Ruegeria pomeroyi] WP_011047823.1 20 1 0 1 2081 FAD-dependent oxidoreductase [Ruegeria pomeroyi] WP_011047365.1 89 0 1 2 2082 23S rRNA (Uracil-5-)-methyltransferase rumA [Ruegeria pomeroyi DSS-3] AAV93360.1 (+1) 44 1 0 2 2083 hypothetical protein SPOA0290 (plasmid) [Ruegeria pomeroyi DSS-3] AAV97424.1 37 0 2 0 2084 phosphoribosyl-AMP cyclohydrolase [Ruegeria pomeroyi DSS-3] AAV94969.1 13 1 0 0 2085 thiamine pyrophosphate-binding domain protein [Ruegeria pomeroyi DSS-3] AAV96124.1 53 0 0 2 2086 sulfoacetaldehyde acetyltransferase [Ruegeria pomeroyi DSS-3] AAV96786.1 (+1) 64 1 0 0 2087 ATP-binding protein [Ruegeria pomeroyi] WP_011047678.1 38 0 0 2 2088 SIS domain protein [Ruegeria pomeroyi DSS-3] AAV95122.1 36 0 1 3 2089 RecName: Full=ATP-dependent Clp protease adapter protein ClpS Q5LMA7.1 13 0 1 0 2090 Rrf2 family protein (plasmid) [Ruegeria pomeroyi DSS-3] AAV97320.1 17 0 0 1 2091 SDR family NAD(P)-dependent oxidoreductase [Ruegeria pomeroyi] WP_011046474.1 30 0 1 1 2092 arsenate reductase [Ruegeria pomeroyi] WP_011047017.1 11 2 0 2 2093 zinc metallopeptidase; putative [Ruegeria pomeroyi DSS-3] AAV96771.1 31 3 0 2 2094 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ [Ruegeria pomeroyi] WP_011046182.1 29 0 1 2 2095 hypothetical protein SPO1808 [Ruegeria pomeroyi DSS-3] AAV95087.1 (+1) 20 0 2 2 2096 glyoxylate degradation regulator (plasmid) [Ruegeria pomeroyi DSS-3] AAV97279.1 31 0 1 3 2097 hypothetical protein [Ruegeria pomeroyi] WP_011046493.1 64 1 0 0 2098 phenylacetic acid degradation protein PaaI [Ruegeria pomeroyi DSS-3] AAV94060.1 28 0 1 2 2099 hypothetical protein SPO2026 [Ruegeria pomeroyi DSS-3] AAV95298.1 24 3 0 0 2100 VOC family protein [Ruegeria pomeroyi] WP_011046074.1 14 2 0 0 2101 OmpA family protein [Ruegeria pomeroyi] WP_011049435.1 32 0 0 2 2102 thiamine pyrophosphate-binding protein [Ruegeria pomeroyi] WP_011242086.1 59 0 1 0 2103 pilus assembly protein TadG-related protein [Ruegeria pomeroyi] WP_011047476.1 61 1 0 0 2104 hypothetical protein SPO1435 [Ruegeria pomeroyi DSS-3] AAV94722.1 (+1) 32 2 1 1 2105 hypothetical protein SPO2900 [Ruegeria pomeroyi DSS-3] AAV96141.1 39 1 0 2 2106 ABC transporter ATP-binding protein [Ruegeria pomeroyi] WP_011049299.1 28 0 2 1 2107 HD domain protein [Ruegeria pomeroyi DSS-3] AAV97076.1 22 0 1 1 2108 NUDIX hydrolase [Ruegeria pomeroyi] WP_011045795.1 17 0 1 1 2109 methyltransferase; UbiE/COQ5 family [Ruegeria pomeroyi DSS-3] AAV95314.1 30 0 0 2 2110 hypothetical protein SPO3453 [Ruegeria pomeroyi DSS-3] AAV96679.1 16 1 0 0 2111 RecName: Full=Adenine deaminase; Short=Adenase; Short=Adenine aminase Q5LM18.2-DECOY nd 0 1 1 2112 FAD-dependent oxidoreductase [Ruegeria pomeroyi] WP_011045933.1 71 0 1 1 2113 aspartate aminotransferase family protein [Ruegeria pomeroyi] WP_011047138.1 47 2 1 0 2114 ABC transporter ATP-binding protein [Ruegeria pomeroyi] WP_011047283.1 32 1 1 0 2115 5-formyltetrahydrofolate cyclo-ligase [Ruegeria pomeroyi] WP_011048653.1 20 0 1 1 2116 hypothetical protein SPO1237 [Ruegeria pomeroyi DSS-3] AAV94531.1 (+1) 48 2 0 0 2117 glutathione transferase GstA [Ruegeria pomeroyi] WP_011046934.1 21 2 0 0 2118 2-dehydropantoate 2-reductase [Ruegeria pomeroyi DSS-3] AAV94271.1 34 1 0 1 2119 hypothetical protein SPO2129 [Ruegeria pomeroyi DSS-3] AAV95398.1 28 0 0 2 2120 AI-2E family transporter [Ruegeria pomeroyi] WP_011046866.1 38 2 0 0 2121 unnamed protein product [Ruegeria pomeroyi DSS-3] CAR79494.1 28 0 0 2 2122 site-specific DNA-methyltransferase [Ruegeria pomeroyi] WP_011049134.1 41 2 0 0 2123 phosphoglycerate mutase family protein [Ruegeria pomeroyi DSS-3] AAV93722.1 21 0 0 2 2124 TetR/AcrR family transcriptional regulator [Ruegeria pomeroyi] WP_051420374.1 24 0 0 2 2125 hypothetical protein SPO3610 [Ruegeria pomeroyi DSS-3] AAV96834.1 22 0 0 2 2126 Chain B; TRAP dicarboxylate transporter; DctP subunit gi|238537800|pdb|3FXB|B 36 0 0 2 2127 hypothetical protein [Ruegeria pomeroyi] WP_051420354.1 19 2 0 0 2128 protocatechuate 3;4-dioxygenase subunit beta [Ruegeria pomeroyi] WP_011241828.1 27 0 1 0 2129 DNA-binding protein; putative [Ruegeria pomeroyi DSS-3] AAV96077.1 30 0 0 1 2130 unnamed protein product [Ruegeria pomeroyi DSS-3] CBM35690.1 27 1 0 0 2131 ABC transporter; periplasmic substrate-binding protein; putative [Ruegeria pomeroyi DSS-3] AAV94839.1 49 1 0 0 2132 carboxymuconolactone decarboxylase family protein [Ruegeria pomeroyi DSS-3] AAV94876.1 14 1 0 0 2133 hypothetical protein SPO1118 [Ruegeria pomeroyi DSS-3] AAV94418.1 24 0 1 0 2134 multicopper oxidase family protein [Ruegeria pomeroyi] WP_011047099.1 49 1 0 0 2135 GNAT family acetyltransferase [Ruegeria pomeroyi] WP_011241859.1 22 0 1 0 2136 trimethylamine-N-oxide transporter permease protein [Ruegeria pomeroyi DSS-3] AAV94837.1-DECOY nd 1 0 1 2137 DUF2161 family putative PD-(D/E)XK-type phosphodiesterase [Ruegeria pomeroyi] WP_011048834.1 26 2 0 0 2138 acyl-CoA dehydrogenase family protein [Ruegeria pomeroyi] WP_011046331.1 42 1 0 0 2139 hypothetical protein SPO3548 [Ruegeria pomeroyi DSS-3] AAV96773.1 17 0 2 0 2140 acetyltransferase; GNAT family [Ruegeria pomeroyi DSS-3] AAV94961.1 19 0 2 0 2141 TIGR03862 family flavoprotein [Ruegeria pomeroyi] WP_011049119.1 41 0 0 2 2142 transcriptional regulator; LacI family [Ruegeria pomeroyi DSS-3] AAV93905.1 36 0 2 0 2143 enoyl-CoA hydratase/isomerase family protein [Ruegeria pomeroyi DSS-3] AAV95601.2 (+1) 27 0 0 2 2144 RecName: Full=NADH-quinone oxidoreductase subunit K; AltName: Full=NADH dehydrogenase I subunit K; AltName: Full=NDH-1 subunit K Q5LPT3.1 11 0 0 2 2145 ATP-binding protein [Ruegeria pomeroyi] WP_011047895.1 49 0 0 2 2146 FAD-binding oxidoreductase [Ruegeria pomeroyi] WP_011049232.1 37 0 0 2 2147 transcriptional regulator; TetR family [Ruegeria pomeroyi DSS-3] AAV94386.1 22 0 2 0 2148 aspartate racemase (plasmid) [Ruegeria pomeroyi DSS-3] AAV97202.1 24 2 0 0 2149 unnamed protein product [Ruegeria pomeroyi DSS-3] CBN69957.1 9 2 0 0 2150 (2Fe-2S)-binding protein [Ruegeria pomeroyi] WP_011048526.1 16 2 0 0 2151 hypothetical protein [Ruegeria pomeroyi] WP_144083988.1 15 0 2 0 2152 hypothetical protein [Ruegeria pomeroyi] WP_044028021.1 21 0 2 0 2153 glycerol-3-phosphate acyltransferase/acyl-phosphate--glycerol-3-phosphate acyltransferase [Ruegeria pomeroyi DSS-3] AAV93601.1 21 2 0 0 2154 GNAT family N-acetyltransferase [Ruegeria pomeroyi] WP_011046854.1 17 2 0 0 2155 glutathione S-transferase family protein [Ruegeria pomeroyi] WP_011048898.1 23 0 2 0 2156 transcriptional regulator; LuxR family [Ruegeria pomeroyi DSS-3] AAV94317.1 21 0 1 0 2157 2-dehydro-3-deoxygalactonokinase; putative [Ruegeria pomeroyi DSS-3] AAV94090.1 30 2 0 0 2158 transcriptional regulator; TetR family [Ruegeria pomeroyi DSS-3] AAV93881.1 (+1) 24 0 0 1 2159 CvpA family protein [Ruegeria pomeroyi] WP_011048377.1 20 1 0 0 2160 Lrp/AsnC family transcriptional regulator [Ruegeria pomeroyi] WP_011046000.1 16 0 0 1 2161 thioesterase family protein [Ruegeria pomeroyi DSS-3] AAV96827.1 17 0 1 0 2162 hypothetical protein SPO0504a [Ruegeria pomeroyi DSS-3] AHB86009.1 16 1 0 0 2163 N-formylglutamate amidohydrolase [Ruegeria pomeroyi DSS-3] AAV97141.1 30 0 1 0 2164 alpha/beta hydrolase [Ruegeria pomeroyi] WP_011242185.1 28 0 1 0 2165 branched-chain amino acid ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV95127.1 29 1 0 0 2166 hypothetical protein SPO2206 [Ruegeria pomeroyi DSS-3] AAV95472.1 17 0 0 1 2167 rhodanese-like domain protein [Ruegeria pomeroyi DSS-3] AAV93422.1 34 0 0 2 2168 X-Pro dipeptidyl-peptidase family protein [Ruegeria pomeroyi DSS-3] AAV96232.1 (+1) 74 1 1 0 2169 protocatechuate 3;4-dioxygenase alpha subunit (plasmid) [Ruegeria pomeroyi DSS-3] AAV97183.1 23 0 2 0 2170 phytanoyl-CoA dioxygenase family protein [Ruegeria pomeroyi DSS-3] AAV95669.1 33 0 0 2 2171 hypothetical protein SPO3167 [Ruegeria pomeroyi DSS-3] AAV96402.1 28 0 2 0 2172 Heat shock protein [Ruegeria pomeroyi DSS-3] AHB86030.1 (+1) 16 0 2 0 2173 hypothetical protein SPO2311 [Ruegeria pomeroyi DSS-3] AAV95573.1 31 0 1 0 2174 cupin domain-containing protein [Ruegeria pomeroyi] WP_011049198.1 15 0 1 0 2175 Smr/MutS family protein [Ruegeria pomeroyi] WP_011049555.1 22 2 0 0 2176 transcriptional regulator; LysR family [Ruegeria pomeroyi DSS-3] AAV96120.1 (+1) 33 2 0 0 2177 oxygen-independent coproporphyrinogen III oxidase [Ruegeria pomeroyi] WP_011049212.1 50 0 1 1 2178 TPR repeat family protein [Ruegeria pomeroyi DSS-3] AAV94558.1 10 0 0 2 2179 ArsJ-associated glyceraldehyde-3-phosphate dehydrogenase [Ruegeria pomeroyi] WP_011049549.1 36 0 1 2 2180 VOC family protein [Ruegeria pomeroyi] WP_011046671.1 15 0 1 0 2181 adenylate/guanylate cyclase [Ruegeria pomeroyi DSS-3] AAV96215.1 36 0 0 1 2182 phytanoyl-CoA dioxygenase family protein [Ruegeria pomeroyi] WP_011048147.1 32 0 1 1 2183 hypothetical protein SPO3118 [Ruegeria pomeroyi DSS-3] AAV96353.1 8 1 0 0 2184 hypothetical protein SPO1278 [Ruegeria pomeroyi DSS-3] AAV94570.1 20 2 0 0 2185 Na/Pi symporter [Ruegeria pomeroyi] WP_144083942.1 56 0 0 1 2186 dihydrodipicolinate synthase family protein [Ruegeria pomeroyi DSS-3] AAV94985.1 (+1) 32 0 1 0 2187 alpha/beta fold hydrolase [Ruegeria pomeroyi] WP_011046267.1 38 0 2 0 2188 CGNR zinc finger domain-containing protein [Ruegeria pomeroyi] WP_011046145.1 21 0 1 1 2189 type I secretion target repeat protein [Ruegeria pomeroyi DSS-3] AAV94913.1 130 0 1 0 2190 RecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O Q5LNK7.1 26 0 0 2 2191 transporter substrate-binding domain-containing protein [Ruegeria pomeroyi] WP_011048733.1 28 0 0 1 2192 thiosulfohydrolase SoxB [Ruegeria pomeroyi] WP_011046745.1 63 1 0 2 2193 dihydrodipicolinate synthase family protein (plasmid) [Ruegeria pomeroyi DSS-3] AAV97378.1 33 2 2 0 2194 sn-glycerol-3-phosphate import ATP-binding protein UgpC [Ruegeria pomeroyi] WP_011046004.1 38 1 0 0 2195 branched-chain amino acid ABC transporter; periplasmic branched-chain amino acid-binding protein (plasmid) [Ruegeria pomeroyi DSS-3] AAV97434.1 42 1 1 0 2196 iron-sulfur cluster-binding protein [Ruegeria pomeroyi DSS-3] AAV96984.1 38 1 0 1 2197 hypothetical protein SPO0036 [Ruegeria pomeroyi DSS-3] AAV93367.1 (+1) 40 0 2 1 2198 glycosyltransferase [Ruegeria pomeroyi] WP_011046591.1 43 0 0 1 2199 DNA replication and repair protein RecF [Ruegeria pomeroyi DSS-3] AAV93479.1 40 1 0 1 2200 transcriptional regulator; LysR family [Ruegeria pomeroyi DSS-3] AAV96817.1 33 2 0 0 2201 hypothetical protein [Ruegeria pomeroyi] WP_011241908.1 34 0 3 0 2202 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG [Ruegeria pomeroyi] WP_011045774.1 23 0 2 2 2203 GAF domain-containing protein [Ruegeria pomeroyi] WP_011049088.1 16 2 2 0 2204 sulfur oxidation Y protein [Ruegeria pomeroyi DSS-3] AAV94298.1 14 0 1 2 2205 phytanoyl-CoA dioxygenase family protein [Ruegeria pomeroyi] WP_011241785.1 30 0 3 0 2206 molybdopterin oxidoreductase family protein [Ruegeria pomeroyi] WP_011049239.1 105 1 0 0 2207 cobalt-precorrin-6A reductase [Ruegeria pomeroyi] WP_011048568.1 26 0 1 2 2208 hypothetical protein SPO2647 [Ruegeria pomeroyi DSS-3] AAV95892.1 (+1) 45 1 0 2 2209 aminotransferase family protein [Ruegeria pomeroyi DSS-3] AAV94755.1 39 2 1 0 2210 membrane protein; putative [Ruegeria pomeroyi DSS-3] AAV94917.1 59 1 0 2 2211 prolyl oligopeptidase family serine peptidase [Ruegeria pomeroyi] WP_030003162.1 23 2 0 0 2212 heme ABC exporter ATP-binding protein CcmA [Ruegeria pomeroyi] WP_011048034.1 21 0 0 2 2213 hypothetical protein SPO0518 [Ruegeria pomeroyi DSS-3] AAV93835.1 (+1) 26 0 3 0 2214 amidohydrolase domain protein [Ruegeria pomeroyi DSS-3] AAV94124.1 (+1) 41 0 3 0 2215 hypothetical protein SPO2479 [Ruegeria pomeroyi DSS-3] AAV95732.1 16 0 2 0 2216 hypothetical protein SPOA0348 (plasmid) [Ruegeria pomeroyi DSS-3] AAV97480.1 20 2 0 0 2217 hypothetical protein SPO2278 [Ruegeria pomeroyi DSS-3] AAV95542.1 56 1 0 0 2218 transcriptional regulator GcvA [Ruegeria pomeroyi] WP_011047377.1 35 1 0 0 2219 transcriptional regulator; GntR family [Ruegeria pomeroyi DSS-3] AAV95004.1 28 0 1 0 2220 hypothetical protein SPO3052 [Ruegeria pomeroyi DSS-3] AAV96288.1 15 0 0 2 2221 transcriptional regulator; AsnC family [Ruegeria pomeroyi DSS-3] AAV94655.1 17 0 1 0 2222 alcohol dehydrogenase family protein [Ruegeria pomeroyi] WP_044028113.1 38 0 0 1 2223 dihydropteroate synthase [Ruegeria pomeroyi] WP_044028067.1 35 0 2 0 2224 transketolase [Ruegeria pomeroyi] WP_011242096.1 87 0 0 1 2225 BadF/BadG/BcrA/BcrD ATPase family protein [Ruegeria pomeroyi DSS-3] AAV95120.1 30 2 0 0 2226 GntR family transcriptional regulator [Ruegeria pomeroyi] WP_011048148.1 28 0 0 1 2227 LPS export ABC transporter permease LptF [Ruegeria pomeroyi] WP_011049458.1 41 0 0 1 2228 ABC transporter permease [Ruegeria pomeroyi] WP_044027816.1 34 1 0 0 2229 transcriptional regulator; TetR family [Ruegeria pomeroyi DSS-3] AAV95016.1 22 0 0 1 2230 oligopeptide/dipeptide ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV96997.1 38 0 0 2 2231 hypothetical protein SPO3023 [Ruegeria pomeroyi DSS-3] AAV96259.1 14 0 1 0 2232 RecName: Full=PqqA peptide cyclase; AltName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E Q5LTB4.1 40 1 0 0 2233 Asp/Glu/Hydantoin racemase family protein [Ruegeria pomeroyi DSS-3] AAV94982.1 26 1 0 0 2234 UDP-N-acetylmuramate dehydrogenase [Ruegeria pomeroyi] WP_011046943.1 33 1 0 0 2235 transcriptional regulator; MarR family (plasmid) [Ruegeria pomeroyi DSS-3] AAV97538.1 17 0 0 1 2236 N-acetyltransferase [Ruegeria pomeroyi DSS-3] AAV95742.1 29 0 0 1 2237 tRNA-cytidine(32) 2-sulfurtransferase [Ruegeria pomeroyi DSS-3] AAV93851.1 34 0 1 1 2238 SDR family oxidoreductase [Ruegeria pomeroyi] WP_011048542.1 26 1 0 0 2239 TIGR02302 family protein [Ruegeria pomeroyi] WP_011046096.1-DECOY nd 2 0 0 2240 AAA family ATPase [Ruegeria pomeroyi] WP_011241869.1 66 0 0 1 2241 amidase [Ruegeria pomeroyi] WP_011048234.1 50 0 1 2 2242 NADH:flavin oxidoreductase [Ruegeria pomeroyi] WP_011045935.1-DECOY nd 0 0 1 2243 acetyl-CoA C-acetyltransferase [Ruegeria pomeroyi] WP_011242202.1 42 0 0 1 2244 diaminopropionate ammonia-lyase [Ruegeria pomeroyi] WP_011047918.1 42 1 0 0 2245 arginase [Ruegeria pomeroyi DSS-3] AAV95388.1 (+1) 37 0 1 0 2246 glutathione S-transferase; putative [Ruegeria pomeroyi DSS-3] AAV93878.1 23 0 0 2 2247 FAD-binding oxidoreductase [Ruegeria pomeroyi] WP_011241988.1 48 0 1 0 2248 phosphate ABC transporter; permease protein [Ruegeria pomeroyi DSS-3] AAV95226.1 48 0 0 2 2249 metallo-beta-lactamase family protein [Ruegeria pomeroyi DSS-3] AAV93747.1 32 2 0 0 2250 FixH family protein [Ruegeria pomeroyi] WP_011049201.1 16 0 2 0 2251 hypothetical protein SPO0844 [Ruegeria pomeroyi DSS-3] AAV94149.1 94 0 1 0 2252 sensor histidine kinase [Ruegeria pomeroyi DSS-3] AAV95822.1 (+1) 59 0 1 2 2253 methyltransferase domain-containing protein [Ruegeria pomeroyi] WP_011049059.1 45 2 0 0 2254 muconate cycloisomerase I [Ruegeria pomeroyi DSS-3] AAV96890.1 41 0 1 0 2255 ADA regulatory protein; putative [Ruegeria pomeroyi DSS-3] AAV96538.1 39 1 0 0 2256 D-alanyl-D-alanine carboxypeptidase family protein [Ruegeria pomeroyi DSS-3] AAV96881.1 52 0 0 2 2257 hypothetical protein SPO0475 [Ruegeria pomeroyi DSS-3] AAV93793.1 25 0 0 2 2258 RecName: Full=Anhydro-N-acetylmuramic acid kinase; AltName: Full=AnhMurNAc kinase Q5LQK6.1 37 0 1 0 2259 tyrosine recombinase XerC [Ruegeria pomeroyi DSS-3] AAV96365.1 33 0 0 2 2260 alkylphosphonate utilization protein PhnM [Ruegeria pomeroyi DSS-3] AAV93794.1 41 0 0 2 2261 hypothetical protein SPO2718 [Ruegeria pomeroyi DSS-3] AAV95963.1 29 2 0 0 2262 transcriptional regulator; LysR family [Ruegeria pomeroyi DSS-3] AAV93772.1 32 0 1 0 2263 hypothetical protein SPO1286 [Ruegeria pomeroyi DSS-3] AAV94578.1 36 0 1 0 2264 DNA polymerase III subunit epsilon [Ruegeria pomeroyi] WP_011049560.1 27 0 0 2 2265 glycine betaine/proline ABC transporter; ATP-binding protein [Ruegeria pomeroyi DSS-3] AAV95697.1 39 0 2 0 2266 benzoate-coenzyme A ligase (plasmid) [Ruegeria pomeroyi DSS-3] AAV97533.1 59 0 1 0 2267 hypothetical protein SPO1598 [Ruegeria pomeroyi DSS-3] AAV94885.1 31 0 2 0 2268 histidine phosphatase family protein [Ruegeria pomeroyi] WP_011046309.1 22 0 1 0 2269 transcriptional regulator; LacI family (plasmid) [Ruegeria pomeroyi DSS-3] AAV97386.1 37 0 0 2 2270 GntR family transcriptional regulator [Ruegeria pomeroyi] WP_011049153.1 25 0 0 2 2271 cytochrome c oxidase assembly protein CtaG [Ruegeria pomeroyi DSS-3] AAV96309.1 21 0 2 0 2272 YcgN family cysteine cluster protein [Ruegeria pomeroyi] WP_011048845.1 18 0 2 0 2273 DUF2062 domain-containing protein [Ruegeria pomeroyi] WP_011048892.1 24 0 2 0 2274 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase [Ruegeria pomeroyi] WP_011046166.1 19 2 0 0 2275 LysR family transcriptional regulator [Ruegeria pomeroyi] WP_011048709.1 34 2 0 0 2276 threonine dehydratase [Ruegeria pomeroyi DSS-3] AAV93351.1 45 2 0 0 2277 hypothetical protein SPO1008 [Ruegeria pomeroyi DSS-3] AAV94312.1 13 2 0 0 2278 FAD binding domain-containing protein [Ruegeria pomeroyi] WP_011046580.1 29 0 0 2 2279 hypothetical protein SPO0295 [Ruegeria pomeroyi DSS-3] AAV93613.1 (+1) 29 0 0 1 2280 branched-chain amino acid ABC transporter; periplasmic branched-chain amino acid-binding protein; putative [Ruegeria pomeroyi DSS-3] AAV95784.1 47 1 0 0 2281 sarcosine oxidase; delta subunit family [Ruegeria pomeroyi DSS-3] AAV95025.1 10 0 1 0 2282 radical SAM domain protein [Ruegeria pomeroyi DSS-3] AAV95320.1 (+1) 38 0 1 0 2283 sensory box histidine kinase/response regulator [Ruegeria pomeroyi DSS-3] AAV93489.1 91 0 0 1 2284 TRAP transporter substrate-binding protein [Ruegeria pomeroyi] WP_011046347.1 41 0 0 2 2285 glycosyltransferase family 4 protein [Ruegeria pomeroyi] WP_011046310.1 39 0 0 2 2286 type I secretion membrane fusion protein; HlyD family [Ruegeria pomeroyi DSS-3] AAV95269.1 49 0 2 0 2287 fructokinase (plasmid) [Ruegeria pomeroyi DSS-3] AAV97410.1 32 0 2 0 2288 nuclear transport factor 2 family protein [Ruegeria pomeroyi] WP_011048674.1 34 2 0 0 2289 Gfo/Idh/MocA family oxidoreductase [Ruegeria pomeroyi] WP_144084000.1 36 0 0 1 2290 thioredoxin domain-containing protein [Ruegeria pomeroyi] WP_011046203.1 15 0 2 0 2291 mechanosensitive ion channel [Ruegeria pomeroyi] WP_011045986.1 49 0 0 2 2292 S1 RNA binding domain protein (plasmid) [Ruegeria pomeroyi DSS-3] AAV97440.1-DECOY nd 1 0 0 2293 hypothetical protein SPO0899 [Ruegeria pomeroyi DSS-3] AAV94204.1-DECOY (+1) nd 0 1 0 2294 hypothetical protein [Ruegeria pomeroyi] WP_011048014.1 34 1 0 0 2295 H+-transporting two-sector ATPase; flagellum-specific [Ruegeria pomeroyi DSS-3] AAV93509.1-DECOY nd 1 0 0 2296 A/G-specific adenine glycosylase [Ruegeria pomeroyi] WP_011049131.1 39 2 0 0 2297 alkaline phosphatase family protein [Ruegeria pomeroyi] WP_011241904.1-DECOY nd 0 1 0 2298 four-carbon acid sugar kinase family protein [Ruegeria pomeroyi] WP_011048266.1 43 1 0 0 2299 serine hydrolase [Ruegeria pomeroyi] WP_011047378.1 43 0 0 2 2300 TRAP transporter; periplasmic protein [Ruegeria pomeroyi DSS-3] AAV94412.1 36 0 0 1 2301 hypothetical protein [Ruegeria pomeroyi] WP_011046677.1 26 0 0 1 2302 hypothetical protein SPO2691 [Ruegeria pomeroyi DSS-3] AAV95936.1-DECOY nd 0 1 0 2303 efflux RND transporter permease subunit [Ruegeria pomeroyi] WP_011046670.1 108 0 0 2 2304 LysR family transcriptional regulator [Ruegeria pomeroyi] WP_011047740.1 36 2 0 0 2305 hypothetical protein SPO2016 [Ruegeria pomeroyi DSS-3] AAV95289.1 17 2 0 0 2306 glutamate--cysteine ligase family protein [Ruegeria pomeroyi DSS-3] AAV95475.1 (+1) 44 0 1 0 2307 glutathione S-transferase family protein [Ruegeria pomeroyi] WP_011048912.1 38 1 0 0 2308 DNA polymerase IV [Ruegeria pomeroyi] WP_011048964.1 46 0 1 1 2309 hypothetical protein SPOA0088 (plasmid) [Ruegeria pomeroyi DSS-3] AAV97226.1 88 0 0 1 2310 hypothetical protein SPO3838 [Ruegeria pomeroyi DSS-3] AAV97052.1 19 0 0 1 2311 RecName: Full=Sugar fermentation stimulation protein homolog Q5LM03.1 25 0 1 0 2312 membrane protein; putative [Ruegeria pomeroyi DSS-3] AAV95286.1 (+1) 53 0 1 0 2313 hypothetical protein SPOA0065 (plasmid) [Ruegeria pomeroyi DSS-3] AAV97205.1 55 0 0 1 2314 hypothetical protein [Ruegeria pomeroyi] WP_011049285.1 31 0 0 1 2315 amino acid ABC transporter; periplasmic amino acid-binding protein [Ruegeria pomeroyi DSS-3] AAV95622.1 36 0 1 0 2316 YifB family Mg chelatase-like AAA ATPase [Ruegeria pomeroyi] WP_011046163.1 53 0 1 0 2317 glycosyl transferase; group 2 family protein [Ruegeria pomeroyi DSS-3] AAV94540.1 25 0 0 1 2318 GlxA family transcriptional regulator [Ruegeria pomeroyi] WP_011046750.1 37 0 1 0 2319 M48 family metallopeptidase [Ruegeria pomeroyi] WP_011048435.1 27 0 2 0 2320 enoyl-CoA hydratase/isomerase family protein [Ruegeria pomeroyi DSS-3] AAV96869.1 34 1 0 0 2321 hypothetical protein SPO2745 [Ruegeria pomeroyi DSS-3] AAV95986.1 (+1) 27 0 0 2 2322 hypothetical protein SPO2942 [Ruegeria pomeroyi DSS-3] AAV96183.2 14 0 2 0 2323 hypothetical protein SPO3574 [Ruegeria pomeroyi DSS-3] AAV96799.1 21 1 0 0 2324 tRNA glutamyl-Q(34) synthetase GluQRS [Ruegeria pomeroyi] WP_011047420.1 31 0 2 0 2325 inositol monophosphatase family protein [Ruegeria pomeroyi DSS-3] AAV96669.1 29 0 0 1 2326 membrane protein [Ruegeria pomeroyi] WP_011049513.1 35 0 1 0 2327 Cys/Met metabolism PLP-dependent enzyme family protein [Ruegeria pomeroyi DSS-3] AAV96570.2-DECOY (+1) nd 0 1 0 2328 RNA repair transcriptional activator RtcR [Ruegeria pomeroyi] WP_011045927.1 59 0 1 0 2329 hypothetical protein [Ruegeria pomeroyi] WP_030003171.1 14 1 0 0 2330 NAD(P)-dependent oxidoreductase [Ruegeria pomeroyi] WP_011048559.1 34 0 0 2 2331 site-specific recombinase; phage integrase family [Ruegeria pomeroyi DSS-3] AAV94514.1 61 2 0 0 2332 MoaD/ThiS family protein [Ruegeria pomeroyi] WP_011242192.1 9 0 0 2 2333 RecName: Full=PqqA binding protein; AltName: Full=Coenzyme PQQ synthesis protein D; AltName: Full=Pyrroloquinoline quinone biosynthesis protein D Q5LTB3.1 10 0 2 0 2334 phosphonate metabolism transcriptional regulator PhnF [Ruegeria pomeroyi] WP_011046228.1 25 0 0 2 2335 RecName: Full=Endoribonuclease YbeY Q5LLL4.1 18 2 0 0 2336 enoyl-CoA hydratase/isomerase family protein [Ruegeria pomeroyi DSS-3] AAV94082.1 27 0 0 1 2337 hypothetical protein SPO0940 [Ruegeria pomeroyi DSS-3] AAV94245.1 13 0 0 1 2338 hypothetical protein SPO2892 [Ruegeria pomeroyi DSS-3] AAV96133.1 16 1 0 0 2339 RecName: Full=Thiazole synthase Q5LWJ1.1 27 0 0 1 2340 hypothetical protein SPO2878 [Ruegeria pomeroyi DSS-3] AAV96119.1 14 0 0 1 2341 aspartate aminotransferase [Ruegeria pomeroyi DSS-3] AAV95401.1 42 0 0 1